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biocLite("facopy.annot")
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facopy.annot
Annotation for the copy number alteration association and enrichment analyses with facopy
Bioconductor version: 3.0
Provides facopy with genome annotation on chromosome arms, genomic features and copy number alterations.
Author: David Mosen-Ansorena
Maintainer: David Mosen-Ansorena <dmosen.gn at cicbiogune.es>
Citation (from within R,
enter citation("facopy.annot")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("facopy.annot")
Documentation
| Reference Manual |
Details
| biocViews | AnnotationData, ExperimentData, FunctionalAnnotation |
| Version | 1.0.0 |
| License | GPL-3 |
| Depends | R (>= 2.10) |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | facopy |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | facopy.annot_1.0.0.tar.gz |
| Windows Binary | facopy.annot_1.0.0.zip |
| Mac OS X 10.6 (Snow Leopard) | facopy.annot_1.0.0.tgz |
| Mac OS X 10.9 (Mavericks) | facopy.annot_1.0.0.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
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