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Fletcher2013b
Master regulators of FGFR2 signalling and breast cancer risk.
Bioconductor version: 3.0
This package reproduces the systems biology analysis for the data in package Fletcher2013a using RTN.
Author: Mauro Castro, Michael Fletcher, Florian Markowetz and Kerstin Meyer.
Maintainer: Mauro Castro <mauro.a.castro at gmail.com>
Citation (from within R,
enter citation("Fletcher2013b")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("Fletcher2013b")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Fletcher2013b")
| R Script | Main vignette:Fletcher2013b | |
| Reference Manual |
Details
| biocViews | Cancer, ExperimentData, RNAExpressionData |
| Version | 1.1.1 |
| License | GPL (>= 2) |
| Depends | R (>= 2.15), Fletcher2013a, biomaRt, VennDiagram, RTN(>= 1.1.2), RedeR(>= 1.8.1) |
| Imports | RColorBrewer, corrgram |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | http://dx.doi.org/10.1038/ncomms3464 |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | Fletcher2013b_1.1.1.tar.gz |
| Windows Binary | Fletcher2013b_1.1.1.zip |
| Mac OS X 10.6 (Snow Leopard) | Fletcher2013b_1.1.1.tgz |
| Mac OS X 10.9 (Mavericks) | Fletcher2013b_1.1.1.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
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