To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("DREAM4")
In most cases, you don't need to download the package archive at all.
DREAM4
Synthetic Expression Data for Gene Regulatory Network Inference from the 2009 DREAM4 challenge
Bioconductor version: 3.0
Simulated expression data for five 10-node, and five 100-node networks, with associated data (including solutions) from the 2009 DREAM4 challenge.
Author: Paul Shannon
Maintainer: Paul Shannon <pshannon at fhcrc.org>
Citation (from within R,
enter citation("DREAM4")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("DREAM4")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DREAM4")
| R Script | DREAM4 Overview | |
| DREAM4_InSilico_Description.pdf | ||
| Reference Manual |
Details
| biocViews | ExperimentData, NetworkInference, RNAExpressionData |
| Version | 1.1.1 |
| License | GPL |
| Depends | R (>= 2.15.1), GenomicRanges |
| Imports | BiocGenerics |
| LinkingTo | |
| Suggests | RUnit, networkBMA |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | DREAM4_1.1.1.tar.gz |
| Windows Binary | DREAM4_1.1.1.zip |
| Mac OS X 10.6 (Snow Leopard) | DREAM4_1.1.1.tgz |
| Mac OS X 10.9 (Mavericks) | DREAM4_1.1.1.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
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