Annotation package for Illumina Infinium DNA methylation probes


[Up] [Top]

Documentation for package ‘FDb.InfiniumMethylation.hg18’ version 2.1.99

Help Pages

FDb.InfiniumMethylation.hg18-package Annotation package for Illumina Infinium DNA methylation probes
FDb.InfiniumMethylation.hg18 Annotation package for Illumina Infinium DNA methylation probes
get27k Retrieve annotations for HumanMethylation27 or HumanMethylation450 chips
get450k Retrieve annotations for HumanMethylation27 or HumanMethylation450 chips
getNearest Annotate a group of probes supplied as a GenomicRanges object
getNearestGene Annotate a group of probes supplied as a GenomicRanges object
getNearestTranscript Annotate a group of probes supplied as a GenomicRanges object
getNearestTSS Annotate a group of probes supplied as a GenomicRanges object
getPlatform Retrieve annotations for HumanMethylation27 or HumanMethylation450 chips
hg18.islands CpG islands found by Wu, Irizarry, and Feinberg via hidden Markov model
hg18ToHg19 miscellaneous data used in the construction of this FeatureDb package
hm27.controls miscellaneous data used in the construction of this FeatureDb package
hm27.SNP.colors miscellaneous data used in the construction of this FeatureDb package
hm450.controls miscellaneous data used in the construction of this FeatureDb package
hm450k.rsProbes miscellaneous data used in the construction of this FeatureDb package
seqinfo.hg18 Sequence names, lengths, and circularity for hg18
SNPs.hg18 miscellaneous data used in the construction of this FeatureDb package
unmappable miscellaneous data used in the construction of this FeatureDb package