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To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("microRNA")
In most cases, you don't need to download the package archive at all.
microRNA
Data and functions for dealing with microRNAs
Bioconductor version: 3.0
Different data resources for microRNAs and some functions for manipulating them.
Author: R. Gentleman, S. Falcon
Maintainer: "James F. Reid" <james.reid at ifom-ieo-campus.it>
Citation (from within R,
enter citation("microRNA")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("microRNA")
Documentation
| Reference Manual |
Details
| biocViews | GenomeAnnotation, Infrastructure, SequenceMatching, Software |
| Version | 1.24.0 |
| In Bioconductor since | BioC 2.3 (R-2.8) |
| License | Artistic-2.0 |
| Depends | R (>= 2.10) |
| Imports | Biostrings(>= 2.11.32) |
| LinkingTo | |
| Suggests | Biostrings(>= 2.11.32) |
| SystemRequirements | |
| Enhances | Rlibstree |
| URL | |
| Depends On Me | Roleswitch |
| Imports Me | |
| Suggests Me | MmPalateMiRNA, rtracklayer |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | microRNA_1.24.0.tar.gz |
| Windows Binary | microRNA_1.24.0.zip |
| Mac OS X 10.6 (Snow Leopard) | microRNA_1.24.0.tgz |
| Mac OS X 10.9 (Mavericks) | microRNA_1.24.0.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
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