To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("lapmix")
In most cases, you don't need to download the package archive at all.
lapmix
Laplace Mixture Model in Microarray Experiments
Bioconductor version: 3.0
Laplace mixture modelling of microarray experiments. A hierarchical Bayesian approach is used, and the hyperparameters are estimated using empirical Bayes. The main purpose is to identify differentially expressed genes.
Author: Yann Ruffieux, contributions from Debjani Bhowmick, Anthony C. Davison, and Darlene R. Goldstein
Maintainer: Yann Ruffieux <yann.ruffieux at epfl.ch>
Citation (from within R,
enter citation("lapmix")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("lapmix")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("lapmix")
| R Script | lapmix example | |
| Reference Manual |
Details
| biocViews | DifferentialExpression, Microarray, OneChannel, Software |
| Version | 1.32.0 |
| In Bioconductor since | BioC 1.9 (R-2.4) |
| License | GPL (>= 2) |
| Depends | R (>= 2.6.0), stats |
| Imports | Biobase, graphics, grDevices, methods, stats, tools, utils |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | http://www.r-project.org http://www.bioconductor.org http://stat.epfl.ch |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | lapmix_1.32.0.tar.gz |
| Windows Binary | lapmix_1.32.0.zip |
| Mac OS X 10.6 (Snow Leopard) | lapmix_1.32.0.tgz |
| Mac OS X 10.9 (Mavericks) | lapmix_1.32.0.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
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