To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("epivizr")

In most cases, you don't need to download the package archive at all.

epivizr

R Interface to epiviz web app

Bioconductor version: 3.0

This package provides Websocket communication to the epiviz web app (http://epiviz.cbcb.umd.edu) for interactive visualization of genomic data. Objects in R/bioc interactive sessions can be displayed in genome browser tracks or plots to be explored by navigation through genomic regions. Fundamental Bioconductor data structures are supported (e.g., GenomicRanges and SummarizedExperiment objects), while providing an easy mechanism to support other data structures. Visualizations (using d3.js) can be easily added to the web app as well.

Author: Hector Corrada Bravo, Florin Chelaru, Llewellyn Smith, Naomi Goldstein

Maintainer: Hector Corrada Bravo <hcorrada at gmail.com>

Citation (from within R, enter citation("epivizr")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("epivizr")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("epivizr")

HTML	R Script	Introduction to epivizr
PDF		Reference Manual
Text		NEWS
Video		Epiviz quick tour

Details

biocViews	GUI, Infrastructure, Software, Visualization
Version	1.4.6
In Bioconductor since	BioC 2.13 (R-3.0)
License	Artistic-2.0
Depends	R (>= 3.0.1), methods, Biobase, GenomicRanges(>= 1.13.47)
Imports	S4Vectors, httpuv (>= 1.3.0), rjson, OrganismDbi, R6 (>= 2.0.0), mime (>= 0.2), GenomeInfoDb, GenomicFeatures
LinkingTo
Suggests	testthat, roxygen2, knitr, antiProfilesData, hgu133plus2.db, knitrBootstrap, Mus.musculus
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	epivizr_1.4.6.tar.gz
Windows Binary	epivizr_1.4.6.zip
Mac OS X 10.6 (Snow Leopard)	epivizr_1.4.6.tgz
Mac OS X 10.9 (Mavericks)	epivizr_1.4.6.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats

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