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source("http://bioconductor.org/biocLite.R")
biocLite("cobindR")

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cobindR

Finding Co-occuring motifs of transcription factor binding sites

Bioconductor version: 3.0

Finding and analysing co-occuring motifs of transcription factor binding sites in groups of genes

Author: Manuela Benary, Stefan Kroeger, Yuehien Lee, Robert Lehmann

Maintainer: Manuela Benary <manuela.benary at cms.hu-berlin.de>

Citation (from within R, enter citation("cobindR")):

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("cobindR")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cobindR")

biocViews	CellBiology, ChIPSeq, MultipleComparison, SequenceMatching, Software
Version	1.4.0
In Bioconductor since	BioC 2.13 (R-3.0)
License	Artistic-2.0
Depends
Imports	yaml, seqinr, Biostrings, biomaRt, BSgenome, methods, gmp, mclust, rtfbs, gplots, IRanges
LinkingTo
Suggests	RUnit, BiocGenerics
SystemRequirements
Enhances	rGADEM, seqLogo, genoPlotR, parallel, VennDiagram, RColorBrewer, vcd, MotifDb, snowfall
URL
Depends On Me
Imports Me
Suggests Me
Build Report

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