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To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("Streamer")
In most cases, you don't need to download the package archive at all.
Streamer
Enabling stream processing of large files
Bioconductor version: 3.0
Large data files can be difficult to work with in R, where data generally resides in memory. This package encourages a style of programming where data is 'streamed' from disk into R via a `producer' and through a series of `consumers' that, typically reduce the original data to a manageable size. The package provides useful Producer and Consumer stream components for operations such as data input, sampling, indexing, and transformation; see package?Streamer for details.
Author: Martin Morgan, Nishant Gopalakrishnan
Maintainer: Martin Morgan <mtmorgan at fhcrc.org>
Citation (from within R,
enter citation("Streamer")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("Streamer")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Streamer")
| R Script | Streamer: A simple example | |
| Reference Manual |
Details
| biocViews | DataImport, Infrastructure, Software |
| Version | 1.12.0 |
| In Bioconductor since | BioC 2.9 (R-2.14) |
| License | Artistic-2.0 |
| Depends | |
| Imports | methods, graph, RBGL, parallel, BiocGenerics |
| LinkingTo | |
| Suggests | RUnit, Rsamtools(>= 1.5.53), GenomicAlignments, Rgraphviz |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | plethy |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | Streamer_1.12.0.tar.gz |
| Windows Binary | Streamer_1.12.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | Streamer_1.12.0.tgz |
| Mac OS X 10.9 (Mavericks) | Streamer_1.12.0.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
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