To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("RPA")
In most cases, you don't need to download the package archive at all.
RPA
RPA: Robust Probabilistic Averaging for probe-level analysis
Bioconductor version: 3.0
Probabilistic analysis of probe reliability and differential gene expression on short oligonucleotide arrays. Lahti et al. "Probabilistic Analysis of Probe Reliability in Differential Gene Expression Studies with Short Oligonucleotide Arrays", TCBB/IEEE, 2011. http://doi.ieeecomputersociety.org/10.1109/TCBB.2009.38
Author: Leo Lahti <leo.lahti at iki.fi>
Maintainer: Leo Lahti <leo.lahti at iki.fi>
Citation (from within R,
enter citation("RPA")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("RPA")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RPA")
| Reference Manual | ||
| Text | NEWS | |
| Text | LICENSE |
Details
| biocViews | GeneExpression, Microarray, Preprocessing, QualityControl, Software |
| Version | 1.22.0 |
| In Bioconductor since | BioC 2.5 (R-2.10) |
| License | BSD_2_clause + file LICENSE |
| Depends | R (>= 3.1.1), parallel, affy, methods |
| Imports | |
| LinkingTo | |
| Suggests | affydata |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/antagomir/RPA |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | RPA_1.22.0.tar.gz |
| Windows Binary | RPA_1.22.0.zip |
| Mac OS X 10.6 (Snow Leopard) | RPA_1.22.0.tgz |
| Mac OS X 10.9 (Mavericks) | RPA_1.22.0.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
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