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To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("RDAVIDWebService")
In most cases, you don't need to download the package archive at all.
RDAVIDWebService
An R Package for retrieving data from DAVID into R objects using Web Services API.
Bioconductor version: 3.0
Tools for retrieving data from the Database for Annotation, Visualization and Integrated Discovery (DAVID) using Web Services into R objects. This package offers the main functionalities of DAVID website including: i) user friendly connectivity to upload gene/background list/s, change gene/background position, select current specie/s, select annotations, etc. ii) Reports of the submitted Gene List, Annotation Category Summary, Gene/Term Clusters, Functional Annotation Chart, Functional Annotation Table
Author: Cristobal Fresno and Elmer A. Fernandez
Maintainer: Cristobal Fresno <cfresno at bdmg.com.ar>
Citation (from within R,
enter citation("RDAVIDWebService")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("RDAVIDWebService")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RDAVIDWebService")
| R Script | RDAVIDWebService: a versatile R interface to DAVID | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DifferentialExpression, GraphAndNetwork, Software, Visualization |
| Version | 1.4.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) |
| License | GPL (>=2) |
| Depends | R (>= 2.14.1), methods, graph, GOstats, ggplot2 |
| Imports | Category, GO.db, RBGL, rJava |
| LinkingTo | |
| Suggests | Rgraphviz |
| SystemRequirements | |
| Enhances | |
| URL | http://www.bdmg.com.ar http://david.abcc.ncifcrf.gov/ |
| Depends On Me | CompGO |
| Imports Me | |
| Suggests Me | FGNet |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | RDAVIDWebService_1.4.0.tar.gz |
| Windows Binary | RDAVIDWebService_1.4.0.zip |
| Mac OS X 10.6 (Snow Leopard) | RDAVIDWebService_1.4.0.tgz |
| Mac OS X 10.9 (Mavericks) | RDAVIDWebService_1.4.0.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
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