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biocLite("MPFE")

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MPFE

Estimation of the amplicon methylation pattern distribution from bisulphite sequencing data.

Bioconductor version: 3.0

Estimate distribution of methylation patterns from a table of counts from a bisulphite sequencing experiment given a non-conversion rate and read error rate.

Author: Peijie Lin, Sylvain Foret, Conrad Burden

Maintainer: Conrad Burden <conrad.burden at anu.edu.au>

Citation (from within R, enter citation("MPFE")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("MPFE")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MPFE")

PDF	R Script	MPFE
PDF		Reference Manual
Text		README

Details

biocViews	DNAMethylation, HighThroughputSequencingData, MethylSeq, Software
Version	1.0.0
In Bioconductor since	BioC 3.0 (R-3.1)
License	GPL (>= 3)
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Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	MPFE_1.0.0.tar.gz
Windows Binary	MPFE_1.0.0.zip
Mac OS X 10.6 (Snow Leopard)	MPFE_1.0.0.tgz
Mac OS X 10.9 (Mavericks)	MPFE_1.0.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats

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