To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R") biocLite("MBAmethyl")
In most cases, you don't need to download the package archive at all.
Bioconductor version: 3.0
This package provides a function for reconstructing DNA methylation values from raw measurements. It iteratively implements the group fused lars to smooth related-by-location methylation values and the constrained least squares to remove probe affinity effect across multiple sequences.
Author: Tao Wang, Mengjie Chen
Maintainer: Tao Wang <tao.wang.tw376 at yale.edu>
Citation (from within R,
enter citation("MBAmethyl")
):
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R") biocLite("MBAmethyl")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MBAmethyl")
R Script | MBAmethyl Vignette | |
Reference Manual | ||
Text | NEWS |
biocViews | DNAMethylation, MethylationArray, Software |
Version | 1.0.0 |
In Bioconductor since | BioC 3.0 (R-3.1) |
License | Artistic-2.0 |
Depends | R (>= 2.15) |
Imports | |
LinkingTo | |
Suggests | |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | MBAmethyl_1.0.0.tar.gz |
Windows Binary | MBAmethyl_1.0.0.zip |
Mac OS X 10.6 (Snow Leopard) | MBAmethyl_1.0.0.tgz |
Mac OS X 10.9 (Mavericks) | MBAmethyl_1.0.0.tgz |
Browse/checkout source | (username/password: readonly) |
Package Downloads Report | Download Stats |
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