To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("GGtools")

In most cases, you don't need to download the package archive at all.

GGtools

software and data for analyses in genetics of gene expression

Bioconductor version: 3.0

software and data for analyses in genetics of gene expression and/or DNA methylation

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("GGtools")):

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("GGtools")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GGtools")

PDF	R Script	GGtools: software for eQTL identification
PDF		Reference Manual
Text		README
Text		NEWS

biocViews	GeneExpression, GeneticVariability, Genetics, SNP, Software
Version	5.2.0
In Bioconductor since	BioC 1.9 (R-2.4)
License	Artistic-2.0
Depends	R (>= 2.14), GGBase(>= 3.19.7), data.table, parallel
Imports	methods, utils, stats, BiocGenerics, snpStats, ff, Rsamtools, AnnotationDbi, Biobase, bit, VariantAnnotation, hexbin, rtracklayer, Gviz, stats4, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, iterators, Biostrings, ROCR, biglm, ggplot2, reshape2
LinkingTo
Suggests	GGdata, illuminaHumanv1.db, SNPlocs.Hsapiens.dbSNP.20120608, multtest, aod, rmeta
SystemRequirements
Enhances	MatrixEQTL, Homo.sapiens, parallel, foreach, doParallel, gwascat
URL
Depends On Me	ceu1kg, cgdv17, cheung2010, encoDnaseI, ggtut
Imports Me	ceuhm3
Suggests Me	GGBase, hmyriB36, ind1KG
Build Report

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