To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("CNTools")

In most cases, you don't need to download the package archive at all.

CNTools

Convert segment data into a region by sample matrix to allow for other high level computational analyses.

Bioconductor version: 3.0

This package provides tools to convert the output of segmentation analysis using DNAcopy to a matrix structure with overlapping segments as rows and samples as columns so that other computational analyses can be applied to segmented data

Author: Jianhua Zhang

Maintainer: J. Zhang <jzhang at jimmy.harvard.edu>

Citation (from within R, enter citation("CNTools")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("CNTools")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CNTools")

PDF	R Script	NCTools HowTo
PDF		Reference Manual

Details

biocViews	CopyNumberVariation, Microarray, Software
Version	1.22.0
In Bioconductor since	BioC 2.5 (R-2.10)
License	LGPL
Depends	R (>= 2.10), methods, tools, stats, genefilter
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me	cghMCR
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	CNTools_1.22.0.tar.gz
Windows Binary	CNTools_1.22.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	CNTools_1.22.0.tgz
Mac OS X 10.9 (Mavericks)	CNTools_1.22.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats

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