- Home
- Bioconductor 2.14
- Experiment Packages
- TBX20BamSubset
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("TBX20BamSubset")
In most cases, you don't need to download the package archive at all.
TBX20BamSubset
Subset of BAM files from the "TBX20" experiment
Bioconductor version: 2.14
Dual transcriptional activator and repressor roles of TBX20 regulate adult cardiac structure and function. A subset of the RNA-Seq data.
Author: D. Bindreither
Maintainer: D. Bindreither <daniel.bindreither at gmail.com>
Citation (from within R,
enter citation("TBX20BamSubset")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("TBX20BamSubset")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TBX20BamSubset")
| R Script | TBX20 RNA-Seq data subset | |
| Reference Manual |
Details
| biocViews | ExperimentData, RNAseqData |
| Version | 1.0.0 |
| License | LGPL |
| Depends | Rsamtools(>= 1.9.8) |
| Imports | xtable |
| Suggests | |
| System Requirements | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | TBX20BamSubset_1.0.0.tar.gz |
| Windows Binary | TBX20BamSubset_1.0.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | TBX20BamSubset_1.0.0.tgz |
| Mac OS X 10.9 (Mavericks) | TBX20BamSubset_1.0.0.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!
Contact us: support.bioconductor.org
Hosting provided by Fred Hutchinson Cancer Research Center
Copyright © 2003 - 2014
