To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("MMDiffBamSubset")

In most cases, you don't need to download the package archive at all.

MMDiffBamSubset

Example ChIP-Seq data for the MMDiff package

Bioconductor version: 2.14

Subset of BAM files, including WT_2.bam, Null_2.bam, Resc_2.bam, Input.bam from the "Cfp1" experiment (see Clouaire et al., Genes Dev. 2012). Data is available under ArrayExpress accession numbers E-ERAD-79. Additionally, corresponding subset of peaks called by MACS

Author: Gabriele Schweikert

Maintainer: Gabriele Schweikert <G.Schweikert at ed.ac.uk>

Citation (from within R, enter citation("MMDiffBamSubset")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("MMDiffBamSubset")

Documentation


PDF		Reference Manual

Details

biocViews	ChIPseqData, ExperimentData
Version	1.0.0
License	LGPL
Depends
Imports
Suggests	MMDiff
System Requirements
URL
Depends On Me
Imports Me
Suggests Me	MMDiff

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	MMDiffBamSubset_1.0.0.tar.gz
Windows Binary	MMDiffBamSubset_1.0.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	MMDiffBamSubset_1.0.0.tgz
Mac OS X 10.9 (Mavericks)	MMDiffBamSubset_1.0.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats

Workflows »

Common Bioconductor workflows include:

Oligonucleotide Arrays
High-throughput Sequencing
Counting Reads for Differential Expression (parathyroideSE vignette)
Annotation
Annotating Variants
Annotating Ranges
Flow Cytometry and other assays
Candidate Binding Sites for Known Transcription Factors
Cloud-enabled cis-eQTL search and annotation

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