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yaqcaffy

Affymetrix expression data quality control and reproducibility analysis

Bioconductor version: 2.14

Quality control of Affymetrix GeneChip expression data and reproducibility analysis of human whole genome chips with the MAQC reference datasets.

Author: Laurent Gatto

Maintainer: Laurent Gatto <laurent.gatto at gmail.com>

Citation (from within R, enter citation("yaqcaffy")):

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("yaqcaffy")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("yaqcaffy")

PDF	R Script	yaqcaffy: Affymetrix quality control and MAQC reproducibility
PDF		Reference Manual
Text		NEWS

biocViews	Microarray, OneChannel, QualityControl, ReportWriting, Software
Version	1.24.0
In Bioconductor since	BioC 2.2 (R-2.7)
License	Artistic-2.0
Depends	simpleaffy(>= 2.19.3), methods
Imports	stats4
Suggests	MAQCsubsetAFX, affydata, xtable, tcltk2, tcltk
System Requirements
URL
Depends On Me
Imports Me
Suggests Me	qcmetrics

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