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- shinyTANDEM
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("shinyTANDEM")
In most cases, you don't need to download the package archive at all.
shinyTANDEM
Provides a GUI for rTANDEM
Bioconductor version: 2.14
This package provides a GUI interface for rTANDEM. The GUI is primarily designed to visualize rTANDEM result object or result xml files. But it will also provides an interface for creating parameter objects, launching searches or performing conversions between R objects and xml files.
Author: Frederic Fournier <frederic.fournier at crchuq.ulaval.ca>, Arnaud Droit <arnaud.droit at crchuq.ulaval.ca>
Maintainer: Frederic Fournier <frederic.fournier at crchuq.ulaval.ca>
Citation (from within R,
enter citation("shinyTANDEM")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("shinyTANDEM")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("shinyTANDEM")
| R Script | shinyTANDEM user guide | |
| Reference Manual | ||
| Text | README | |
| Text | NEWS |
Details
| biocViews | MassSpectrometry, Proteomics, Software |
| Version | 1.2.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) |
| License | GPL-3 |
| Depends | rTANDEM(>= 1.3.5), shiny, mixtools, methods, xtable |
| Imports | |
| Suggests | |
| System Requirements | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | shinyTANDEM_1.2.0.tar.gz |
| Windows Binary | shinyTANDEM_1.2.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | shinyTANDEM_1.2.0.tgz |
| Mac OS X 10.9 (Mavericks) | shinyTANDEM_1.2.0.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
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