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biocLite("graphite")

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graphite

GRAPH Interaction from pathway Topological Environment

Bioconductor version: 2.14

Graph objects from pathway topology derived from Biocarta, HumanCyc, KEGG, NCI, Panther, Reactome and SPIKE databases.

Author: Gabriele Sales <gabriele.sales at unipd.it>, Enrica Calura <enrica.calura at gmail.com>, Chiara Romualdi <chiara.romualdi at unipd.it>

Maintainer: Gabriele Sales <gabriele.sales at unipd.it>

Citation (from within R, enter citation("graphite")):

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("graphite")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("graphite")

PDF	R Script	GRAPH Interaction from pathway Topological Environment
PDF		Reference Manual
Text		NEWS
Text		LICENSE

biocViews	GraphAndNetwork, Pathways, Software, ThirdPartyClient
Version	1.10.1
In Bioconductor since	BioC 2.9 (R-2.14)
License	AGPL-3
Depends	R (>= 2.10)
Imports	AnnotationDbi, graph, graphics, methods, org.Hs.eg.db, stats, utils
Suggests	BiocStyle, DEGraph(>= 1.4), hgu133plus2.db, RCytoscape(>= 1.6), SPIA(>= 2.2), topologyGSA (>= 1.4.0), clipper, ALL
System Requirements
URL
Depends On Me
Imports Me	ReactomePA
Suggests Me	clipper

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