To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("arrayQualityMetrics")

In most cases, you don't need to download the package archive at all.

arrayQualityMetrics

Quality metrics on microarray data sets

Bioconductor version: 2.14

This package generates microarray quality metrics reports for data in Bioconductor microarray data containers (ExpressionSet, NChannelSet, AffyBatch). Report contain both general and platform-specific sections. Both one and two color array platforms are supported.

Author: Audrey Kauffmann, Wolfgang Huber

Maintainer: Audrey Kauffmann <akauffmann.bioinfo at gmail.com>

Citation (from within R, enter citation("arrayQualityMetrics")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("arrayQualityMetrics")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("arrayQualityMetrics")

 

PDF R Script Advanced topics: Customizing arrayQualityMetrics reports and programmatic processing of the output
PDF R Script Introduction: microarray quality assessment with arrayQualityMetrics
PDF   Reference Manual
Text   NEWS

Details

biocViews Microarray, OneChannel, QualityControl, ReportWriting, Software, TwoChannel
Version 3.20.0
In Bioconductor since BioC 2.1 (R-2.6)
License LGPL (>= 2)
Depends
Imports affy, affyPLM(>= 1.27.3), beadarray, Biobase, Cairo (>= 1.4-6), genefilter, graphics, grDevices, grid, gridSVG, Hmisc, hwriter, lattice, latticeExtra, limma, methods, RColorBrewer, setRNG, stats, SVGAnnotation (>= 0.9-0), utils, vsn(>= 3.23.3), XML
Suggests ALLMLL, CCl4, BiocStyle, knitr
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source arrayQualityMetrics_3.20.0.tar.gz
Windows Binary arrayQualityMetrics_3.20.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) arrayQualityMetrics_3.20.0.tgz
Mac OS X 10.9 (Mavericks) arrayQualityMetrics_3.20.0.tgz
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