To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GeneRegionScan")

In most cases, you don't need to download the package archive at all.

GeneRegionScan

   

This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see GeneRegionScan.

GeneRegionScan

Bioconductor version: 2.8

A package with focus on analysis of discrete regions of the genome. This package is useful for investigation of one or a few genes using Affymetrix data, since it will extract probe level data using the Affymetrix Power Tools application and wrap these data into a ProbeLevelSet. A ProbeLevelSet directly extends the expressionSet, but includes additional information about the sequence of each probe and the probe set it is derived from. The package includes a number of functions used for plotting these probe level data as a function of location along sequences of mRNA-strands. This can be used for analysis of variable splicing, and is especially well suited for use with exon-array data.

Author: Lasse Folkersen, Diego Diez

Maintainer: Lasse Folkersen <lasse.folkersen at ki.se>

Citation (from within R, enter citation("GeneRegionScan")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GeneRegionScan")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GeneRegionScan")

 

PDF GeneRegionScan.pdf
PDF   Reference Manual

Details

biocViews DataImport, Microarray, OneChannel, SNP, Software, Visualization
Version 1.8.0
In Bioconductor since BioC 2.4 (R-2.9) (7 years)
License GPL (>= 2)
Depends methods, Biobase(>= 2.5.5), Biostrings
Imports Biobase(>= 2.5.5), affxparser, RColorBrewer, Biostrings
LinkingTo
Suggests BSgenome, affy, AnnotationDbi
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source GeneRegionScan_1.8.0.tar.gz
Windows Binary GeneRegionScan_1.8.0.zip
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/GeneRegionScan/tree/release-2.8
Package Short Url http://bioconductor.org/packages/GeneRegionScan/
Package Downloads Report Download Stats

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