oligoClasses

Classes for high-throughput arrays supported by oligo

Bioconductor version: 2.7

This package contains class definitions, validity checks, and initialization methods for classes used by the oligo and crlmm packages.

Author: Benilton Carvalho <carvalho at bclab.org> and Robert Scharpf <rscharpf at jhsph.edu>

Maintainer: Benilton Carvalho <carvalho at bclab.org> and Robert Scharpf <rscharpf at jhsph.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("oligoClasses")

To cite this package in a publication, start R and enter:

    citation("oligoClasses")

Documentation

PDF   Reference Manual

Details

biocViews Infrastructure
Depends Biobase(>= 2.7.3), methods
Imports graphics, Biostrings(>= 2.15.11), affyio(>= 1.15.2)
Suggests pd.genomewidesnp.6, pd.genomewidesnp.5, pd.mapping50k.hind240, pd.mapping50k.xba240, pd.mapping250k.sty, pd.mapping250k.nsp, genomewidesnp6Crlmm, genomewidesnp5Crlmm
System Requirements
License GPL (>= 2)
URL
Depends On Me crlmm, mBPCR, oligo, pd.081229.hg18.promoter.medip.hx1, pd.2006.07.18.hg18.refseq.promoter, pd.2006.07.18.mm8.refseq.promoter, pd.2006.10.31.rn34.refseq.promoter, pd.charm.hg18.example, pd.cytogenetics.array, pd.feinberg.hg18.me.hx1, pd.feinberg.mm8.me.hx1, pd.genomewidesnp.5, pd.genomewidesnp.6, pd.hg.u95a, pd.hg.u95av2, pd.hg18.60mer.expr, pd.ht.hg.u133.plus.pm, pd.huex.1.0.st.v2, pd.hugene.1.0.st.v1, pd.hugene.1.1.st.v1, pd.mapping250k.nsp, pd.mapping250k.sty, pd.mapping50k.hind240, pd.mapping50k.xba240, pd.moex.1.0.st.v1, pd.mogene.1.0.st.v1, pd.mogene.1.1.st.v1, pd.mouse430.2, pd.raex.1.0.st.v1, pd.ragene.1.0.st.v1, pd.ragene.1.1.st.v1, SNPchip, VanillaICE
Imports Me ITALICS, SNPchip
Suggests Me
Version 1.12.2
Since Bioconductor 2.1 (R-2.6)

Package Downloads

Package Source oligoClasses_1.12.2.tar.gz
Windows Binary oligoClasses_1.12.2.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary oligoClasses_1.12.2.tgz
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