Bioconductor version: 2.7
Tools for helping process short read data for chipseq experiments
Author: Deepayan Sarkar, Robert Gentleman, Michael Lawrence, Zizhen Yao
Maintainer: Biocore Team c/o BioC user list <bioconductor at stat.math.ethz.ch>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R") biocLite("chipseq")
To cite this package in a publication, start R and enter:
citation("chipseq")
R Script | A Sample ChIP-Seq analysis workflow | |
Reference Manual |
biocViews | ChIPseq |
Depends | methods, IRanges(>= 1.7.13), GenomicRanges(>= 1.1.29), BSgenome, ShortRead |
Imports | BSgenome, GenomicRanges, IRanges, lattice, methods, ShortRead, stats |
Suggests | GenomicFeatures, BSgenome.Mmusculus.UCSC.mm9 |
System Requirements | |
License | Artistic-2.0 |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | oneChannelGUI |
Version | 1.0.0 |
Since | Bioconductor 2.5 (R-2.10) |
Package Source | chipseq_1.0.0.tar.gz |
Windows Binary | chipseq_1.0.0.zip (32- & 64-bit) |
MacOS 10.5 (Leopard) binary | chipseq_1.0.0.tgz |
Package Downloads Report | Download Stats |
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