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RCytoscape
Display and manipulate graphs in Cytoscape
Bioconductor version: 2.7
Interactvive viewing and exploration of graphs, connecting R to Cytoscape.
Author: Paul Shannon
Maintainer: Paul Shannon <pshannon at systemsbiology.org>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("RCytoscape")
To cite this package in a publication, start R and enter:
citation("RCytoscape")
Documentation
| R Script | RCytoscape Overview | |
| Reference Manual |
Details
| biocViews | GraphsAndNetworks |
| Depends | R (>= 2.11.0), graph(>= 1.26.0) |
| Imports | methods, XMLRPC |
| Suggests | RUnit |
| System Requirements | |
| License | GPL |
| URL | http://db.systemsbiology.net:8080/cytoscape/RCytoscape/ |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 1.0.1 |
| Since | Bioconductor 2.7 (R-2.12) |
Package Downloads
| Package Source | RCytoscape_1.0.1.tar.gz |
| Windows Binary | RCytoscape_1.0.1.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | RCytoscape_1.0.1.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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