arrays | Accessor Methods for YAQCStats class |
arrays-method | Class "YAQCStats" |
arrays-methods | Class "YAQCStats" |
avns | Accessor Methods for YAQCStats class |
avns-method | Class "YAQCStats" |
avns-methods | Class "YAQCStats" |
bio | Class "YaqcControlProbes" |
bio-method | Class "YaqcControlProbes" |
bio-methods | Returns the 'bio' hybridization probes of YaqcControlProbes or YaqcBioProbes objects. |
bioCalls | Accessor Methods for YAQCStats class |
bioCalls-method | Class "YAQCStats" |
bioCalls-methods | Class "YAQCStats" |
deg | Class "YaqcControlProbes" |
deg-method | Class "YaqcControlProbes" |
deg-methods | Returns the degradation probes of YaqcControlProbes or YaqcDegProbes objects. |
gcosProbes | Accessor Methods for YAQCStats class |
gcosProbes-method | Class "YAQCStats" |
gcosProbes-methods | Class "YAQCStats" |
getAllInt | Get the summerized MAS5 values for a given spike probe |
getBioProbes | Get the names of the Bio spike probes on the array |
getOutliers | Get outliers for the different YAQCStatsObject slots |
getQCRatios | Compute qc probe ratios using GCOS intensity values |
getRatioProbes | Get the names of degradation control probes on the array |
getSpikeProbes | Get the names of all spike probes on the array |
getYaqcControlProbes | Accessor Methods for YAQCStats class |
getYaqcControlProbes,method | Class "YAQCStats" |
getYaqcControlProbes-method | Class "YAQCStats" |
info | Class "YaqcControlProbes" |
info-method | Class "YaqcControlProbes" |
info<- | Class "YaqcControlProbes" |
info<--method | Class "YaqcControlProbes" |
isLog | Accessor Methods for YAQCStats class |
isLog-method | Class "YAQCStats" |
isLog-methods | Class "YAQCStats" |
merge-method | Class "YAQCStats" |
moreSpikeInProbes | Accessor Methods for YAQCStats class |
moreSpikeInProbes-method | Class "YAQCStats" |
moreSpikeInProbes-methods | Class "YAQCStats" |
objectVersion | Accessor Methods for YAQCStats class |
objectVersion,method | Class "YAQCStats" |
objectVersion-method | Class "YAQCStats" |
plot | Accessor Methods for YAQCStats class |
plot,YAQCStats | Plots a YAQCStats object |
plot-method | Class "YAQCStats" |
plot-method | Plots a YAQCStats object |
probeSelectionInterface | Tcltk Interface to Generate an Instance of YaqcControlProbes for a given Chip Set |
reprodPlot | Plot human whole genome GeneChips reproductibility |
show-method | Class "YAQCStats" |
show-method | Class "YaqcControlProbes" |
spk | Class "YaqcControlProbes" |
spk-method | Class "YaqcControlProbes" |
spk-methods | Returns the labelling probes of YaqcControlProbes or YaqcSpkProbes objects. |
summary,YAQCStats | Summarizes YAQCStats object outliers |
summary-method | Class "YAQCStats" |
summary-method | Summarizes YAQCStats object outliers |
target-method | Class "YAQCStats" |
target-methods | Class "YAQCStats" |
yaqc | Generate QC Stats from an AffyBatch Object |
yaqc-method | Create an YAQCStat object |
yaqc-methods | Create an YAQCStat object |
yaqc.affy | Generate QC Stats from an AffyBatch Object |
yaqc.plot | Plots a YAQCStats object |
yaqc.summary | Summarizes YAQCStats object outliers |
YaqcBioProbes-class | Class "YaqcControlProbes" |
YaqcControlProbes-class | Class "YaqcControlProbes" |
YaqcDegProbes-class | Class "YaqcControlProbes" |
YaqcSpkProbes-class | Class "YaqcControlProbes" |
YAQCStats-class | Class "YAQCStats" |