alias-method |
Class "gt.object" for storing the result of the function gt |
alias<- |
Class "gt.object" for storing the result of the function gt |
alias<--method |
Class "gt.object" for storing the result of the function gt |
annotation.vandeVijver |
Some selected annotations for the breast cancer data from Rosetta |
checkerboard |
Checkerboard plot for Global Test (Deprecated) |
coefficients-method |
Multinomial Logistic Regression |
combine-method |
Class "gt.result" for results of the function globaltest (Deprecated) |
comparative |
Comparative proportions for the Global Test |
covariates |
Global Test diagnostic plots |
diagnostics |
Global Test diagnostic plots |
draw |
Multiple testing correction for the Global Test |
features |
Global Test diagnostic plots |
findFocus |
Multiple testing correction for the Global Test |
fit |
Class "gt.result" for results of the function globaltest (Deprecated) |
fit-method |
Class "gt.result" for results of the function globaltest (Deprecated) |
fitted.values-method |
Multinomial Logistic Regression |
focusLevel |
Multiple testing correction for the Global Test |
geneplot |
Gene Plot for Global Test (Deprecated) |
genesets |
Class "gt.result" for results of the function globaltest (Deprecated) |
genesets-method |
Class "GOstructure" (Deprecated) |
getFocus |
Multiple testing on the GO graph (Deprecated) |
globaltest |
Global Test (Deprecated) |
GOstructure |
Class "GOstructure" (Deprecated) |
GOstructure-class |
Class "GOstructure" (Deprecated) |
gt |
Global Test (new implementation, 2009) |
gt.barplot |
Class "gt.barplot" for results of the functions geneplot and sampleplot |
gt.barplot-class |
Class "gt.barplot" for results of the functions geneplot and sampleplot |
gt.multtest |
Correct globaltest results for multiple testing (Deprecated) |
gt.object |
Class "gt.object" for storing the result of the function gt |
gt.object-class |
Class "gt.object" for storing the result of the function gt |
gt.options |
Options for globaltest package |
gt.result |
Class "gt.result" for results of the function globaltest (Deprecated) |
gt.result-class |
Class "gt.result" for results of the function globaltest (Deprecated) |
gtBroad |
Gene set testing of gene set databases using Global Test |
gtConcept |
Gene set testing of gene set databases using Global Test |
gtGO |
Gene set testing of gene set databases using Global Test |
gtKEGG |
Gene set testing of gene set databases using Global Test |
hist-method |
Class "gt.object" for storing the result of the function gt |
hist-method |
Class "gt.result" for results of the function globaltest (Deprecated) |
inheritance |
Multiple testing correction for the Global Test |
leafNodes |
Multiple testing correction for the Global Test |
length-method |
Class "gt.object" for storing the result of the function gt |
length-method |
Class "GOstructure" (Deprecated) |
length-method |
Class "gt.barplot" for results of the functions geneplot and sampleplot |
length-method |
Class "gt.result" for results of the function globaltest (Deprecated) |
makeGOstructure |
Multiple testing on the GO graph (Deprecated) |
mlogit |
Multinomial Logistic Regression |
mlogit-class |
Multinomial Logistic Regression |
model.matrix-method |
Class "gt.object" for storing the result of the function gt |
names-method |
Class "gt.object" for storing the result of the function gt |
names-method |
Class "gt.barplot" for results of the functions geneplot and sampleplot |
names-method |
Class "gt.result" for results of the function globaltest (Deprecated) |
names<--method |
Class "gt.object" for storing the result of the function gt |
names<--method |
Class "gt.barplot" for results of the functions geneplot and sampleplot |
names<--method |
Class "gt.result" for results of the function globaltest (Deprecated) |
p.adjust-method |
Class "gt.object" for storing the result of the function gt |
p.value |
Class "gt.object" for storing the result of the function gt |
p.value-method |
Class "gt.object" for storing the result of the function gt |
p.value-method |
Class "gt.result" for results of the function globaltest (Deprecated) |
permutations |
Permutations version of the Global Test (Deprecated) |
plot-method |
Class "gt.barplot" for results of the functions geneplot and sampleplot |
regressionplot |
Regression Plot for Global Test (Deprecated) |
residuals-method |
Multinomial Logistic Regression |
result |
Class "gt.object" for storing the result of the function gt |
result-method |
Class "gt.object" for storing the result of the function gt |
result-method |
Class "gt.barplot" for results of the functions geneplot and sampleplot |
result-method |
Class "gt.result" for results of the function globaltest (Deprecated) |
sampleplot |
Sample Plot for Global Test (Deprecated) |
sampling |
Sampling random 'pathways' for the Global Test |
scale-method |
Class "gt.barplot" for results of the functions geneplot and sampleplot |
show-method |
Class "gt.object" for storing the result of the function gt |
show-method |
Multinomial Logistic Regression |
show-method |
Class "GOstructure" (Deprecated) |
show-method |
Class "gt.barplot" for results of the functions geneplot and sampleplot |
show-method |
Class "gt.result" for results of the function globaltest (Deprecated) |
size |
Class "gt.object" for storing the result of the function gt |
size-method |
Class "gt.object" for storing the result of the function gt |
size-method |
Class "gt.result" for results of the function globaltest (Deprecated) |
sort-method |
Class "gt.object" for storing the result of the function gt |
sort-method |
Class "gt.barplot" for results of the functions geneplot and sampleplot |
sort-method |
Class "gt.result" for results of the function globaltest (Deprecated) |
subjects |
Global Test diagnostic plots |
subsets |
Class "gt.object" for storing the result of the function gt |
subsets-method |
Class "gt.object" for storing the result of the function gt |
summary-method |
Class "gt.object" for storing the result of the function gt |
summary-method |
Multinomial Logistic Regression |
vandeVijver |
A subset of the Breast cancer data from Rosetta Inpharmatics LLC and |
weights-method |
Class "gt.object" for storing the result of the function gt |
z.score |
Class "gt.barplot" for results of the functions geneplot and sampleplot |
z.score-method |
Class "gt.object" for storing the result of the function gt |
z.score-method |
Class "gt.barplot" for results of the functions geneplot and sampleplot |
z.score-method |
Class "gt.result" for results of the function globaltest (Deprecated) |
[-method |
Class "gt.object" for storing the result of the function gt |
[-method |
Class "gt.barplot" for results of the functions geneplot and sampleplot |
[-method |
Class "gt.result" for results of the function globaltest (Deprecated) |
[[-method |
Class "gt.object" for storing the result of the function gt |