baySeq-package |
Empirical Bayesian analysis of patterns of differential expression in |
baySeq |
Empirical Bayesian analysis of patterns of differential expression in |
baySeq-class |
baySeq - classes |
baySeq-classes |
baySeq - classes |
countData |
baySeq - classes |
countData-class |
baySeq - classes |
dim-method |
baySeq - classes |
factCount |
Simulated data for testing the baySeq package methods; simulated counts |
factlibsizes |
Simulated data for testing the baySeq package methods; simulated |
getLikelihoods |
Finds posterior likelihoods for each count as belonging to some |
getLikelihoods.Dirichlet |
Finds posterior likelihoods for each count as belonging to some |
getLikelihoods.NB |
Finds posterior likelihoods for each count as belonging to some |
getLikelihoods.NBboot |
Finds posterior likelihoods for each count as belonging to some |
getLikelihoods.Pois |
Finds posterior likelihoods for each count as belonging to some |
getPosteriors |
An internal function in the baySeq package for calculating posterior |
getPriors |
Estimates prior parameters for the underlying distributions of 'count' |
getPriors.Dirichlet |
Estimates prior parameters for the underlying distributions of 'count' |
getPriors.NB |
Estimates prior parameters for the underlying distributions of 'count' |
getPriors.Pois |
Estimates prior parameters for the underlying distributions of 'count' |
getTPs |
Gets the number of true positives in the top n counts selected by |
libsizes |
Simulated data for testing the baySeq package methods; simulated |
plotMA.CD |
'MA'-plot for count data. |
plotPosteriors |
Plots the posterior likelihoods estimated for a 'countData' object |
plotPriors |
Plots the density of the log values estimated for the mean rate in the |
show-method |
baySeq - classes |
simCount |
Simulated data for testing the baySeq package methods; simulated counts |
simSeg |
Simulated data for testing the baySeq package methods; simulated counts |
topCounts |
Get the top counts corresponding to some group from a 'countData' |
[-method |
baySeq - classes |