pathRender

Render molecular pathways

Bioconductor version: 2.6

build graphs from pathway databases, render them by Rgraphviz

Author: Li Long <lilong at isb-sib.ch>

Maintainer: Li Long <lilong at isb-sib.ch>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("pathRender")

To cite this package in a publication, start R and enter:

    citation("pathRender")

Documentation

PDF R Script pathRender overview
PDF R Script pathway graphs colored by expression map
PDF   Reference Manual

Details

biocViews GraphsAndNetworks
Depends graph, Rgraphviz, RColorBrewer, cMAP, AnnotationDbi, methods
Imports
Suggests ALL, hgu95av2.db
System Requirements
License LGPL
URL http://www.bioconductor.org
Depends On Me
Imports Me
Suggests Me
Version 1.16.0
Since Bioconductor 1.8 (R-2.3)

Package Downloads

Package Source pathRender_1.16.0.tar.gz
Windows Binary pathRender_1.16.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary pathRender_1.16.0.tgz
Package Downloads Report Download Stats

Workflows »

Common Bioconductor workflows include:

 

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center