addXYfromGAL | Computing the coordinates of the spots on a slide |
addXYfromGAL-methods | Computing the coordinates of the spots on a slide |
aqm.boxplot | Performs boxplots on aqmobj.prepdata objects. |
aqm.density | Performs density plots on aqmobj.prepdata objects. |
aqm.heatmap | Performs dendrogram on aqmobj.prepdata objects. |
aqm.maplot | Performs MA-plots on aqmobj.prepdata objects. |
aqm.meansd | Performs Mean/SD plot on aqmobj.prepdata objects. |
aqm.nuse | Performs NUSE plot on aqmobj.prepaffy objects. |
aqm.pca | Performs Principal Component Analysis on aqmobj.prepdata objects. |
aqm.plot | Performs plots from aqm objects. |
aqm.plot-method | Performs plots from aqm objects. |
aqm.plot-methods | Performs plots from aqm objects. |
aqm.pmmm | Performs perfect match versus mismatch density plots. |
aqm.prepaffy | Preparation of Affymetrix experiments for RLE and NUSE. |
aqm.prepdata | Generate an object aqmobj.prepdata to be called by the aqm functions. |
aqm.prepdata-method | Generate an object aqmobj.prepdata to be called by the aqm functions. |
aqm.probesmap | Performs probes mapping on aqmobj.prepdata objects. |
aqm.qcstats | Performs QCstats plot on AffyBatch. |
aqm.rle | Performs RLE plot on aqmobj.prepaffy objects. |
aqm.rnadeg | Performs RNA degradation plot on AffyBatch. |
aqm.spatial | Performs spatial distribution representation of the arrays from aqmobj.prepdata objects. |
aqm.spatialbg | Performs spatial distribution representation of background intensities of the arrays from aqmobj.prepdata objects. |
aqm.writereport | Writes a report from objects produced with aqm.xxx functions. |
aqmobj.box | Class to contain data generated from aqm.boxplot. |
aqmobj.box-class | Class to contain data generated from aqm.boxplot. |
aqmobj.dens | Class to contain data generated from aqm.density. |
aqmobj.dens-class | Class to contain data generated from aqm.density. |
aqmobj.heat | Class to contain data generated from aqm.heatmap. |
aqmobj.heat-class | Class to contain data generated from aqm.heatmap. |
aqmobj.ma | Class to contain data generated from aqm.maplot. |
aqmobj.ma-class | Class to contain data generated from aqm.maplot. |
aqmobj.msd | Class to contain data generated from aqm.meansd. |
aqmobj.msd-class | Class to contain data generated from aqm.meansd. |
aqmobj.nuse | Class to contain data generated from aqm.nuse. |
aqmobj.nuse-class | Class to contain data generated from aqm.nuse. |
aqmobj.pca | Class to contain data generated from aqm.pca. |
aqmobj.pca-class | Class to contain data generated from aqm.pca. |
aqmobj.pmmm | Class to contain data generated from aqm.pmmm. |
aqmobj.pmmm-class | Class to contain data generated from aqm.pmmm. |
aqmobj.prepaffy | Class to contain data generated from aqm.prepaffy. |
aqmobj.prepaffy-class | Class to contain data generated from aqm.prepaffy. |
aqmobj.prepdata | Class to contain data generated from aqm.prepdata. |
aqmobj.prepdata-class | Class to contain data generated from aqm.prepdata. |
aqmobj.probesmap | Class to contain data generated from aqm.probesmap. |
aqmobj.probesmap-class | Class to contain data generated from aqm.probesmap. |
aqmobj.qcs | Class to contain data generated from aqm.qcs. |
aqmobj.qcs-class | Class to contain data generated from aqm.qcs. |
aqmobj.rle | Class to contain data generated from aqm.rle. |
aqmobj.rle-class | Class to contain data generated from aqm.rle. |
aqmobj.rnadeg | Class to contain data generated from aqm.rnadegplot. |
aqmobj.rnadeg-class | Class to contain data generated from aqm.rnadegplot. |
aqmobj.spatial | Class to contain data generated from aqm.spatial. |
aqmobj.spatial-class | Class to contain data generated from aqm.spatial. |
aqmobj.spatialbg | Class to contain data generated from aqm.spatialbg. |
aqmobj.spatialbg-class | Class to contain data generated from aqm.spatialbg. |
arrayQualityMetrics | Quality metrics on microarray experiments |
arrayQualityMetrics-method | Quality metrics on microarray experiments |
arrayQualityMetrics-methods | Quality metrics on microarray experiments |
class.aqmobj.box | Class to contain data generated from aqm.boxplot. |
class.aqmobj.dens | Class to contain data generated from aqm.density. |
class.aqmobj.heat | Class to contain data generated from aqm.heatmap. |
class.aqmobj.ma | Class to contain data generated from aqm.maplot. |
class.aqmobj.msd | Class to contain data generated from aqm.meansd. |
class.aqmobj.nuse | Class to contain data generated from aqm.nuse. |
class.aqmobj.pca | Class to contain data generated from aqm.pca. |
class.aqmobj.pmmm | Class to contain data generated from aqm.pmmm. |
class.aqmobj.prepaffy | Class to contain data generated from aqm.prepaffy. |
class.aqmobj.prepdata | Class to contain data generated from aqm.prepdata. |
class.aqmobj.probesmap | Class to contain data generated from aqm.probesmap. |
class.aqmobj.qcs | Class to contain data generated from aqm.qcs. |
class.aqmobj.rle | Class to contain data generated from aqm.rle. |
class.aqmobj.rnadeg | Class to contain data generated from aqm.rnadegplot. |
class.aqmobj.spatial | Class to contain data generated from aqm.spatial. |
class.aqmobj.spatialbg | Class to contain data generated from aqm.spatialbg. |