as.list-method | TranscriptDb objects |
cds | Retrieving genomic features from a TranscriptDb object. |
cdsBy | Extract and group genomic features of a given type |
cdsByOverlaps | Retrieving genomic features from a TranscriptDb object using a restriction by genomic location. |
class:GenomicFeatures | TranscriptDb objects |
class:TranscriptDb | TranscriptDb objects |
exons | Retrieving genomic features from a TranscriptDb object. |
exonsBy | Extract and group genomic features of a given type |
exonsByOverlaps | Retrieving genomic features from a TranscriptDb object using a restriction by genomic location. |
exons_deprecated | Functions that compute genomic regions of interest. |
extractTranscriptsFromGenome | Extract transcripts from a genome |
fiveUTRsByTranscript | Extract and group genomic features of a given type |
GenomicFeatures | TranscriptDb objects |
GenomicFeatures-class | TranscriptDb objects |
id2name | Extract and group genomic features of a given type |
intronsByTranscript | Extract and group genomic features of a given type |
introns_deprecated | Functions that compute genomic regions of interest. |
loadFeatures | Methods to save and load the database contents for a Transcript Object. |
makeTranscriptDb | Making a TranscriptDb object from user supplied annotations |
makeTranscriptDbFromBiomart | Making a TranscriptDb object from annotations available on a BioMart database |
makeTranscriptDbFromUCSC | Making a TranscriptDb object from annotations available at the UCSC Genome Browser |
saveFeatures | Methods to save and load the database contents for a Transcript Object. |
seqlengths-method | TranscriptDb objects |
seqnames-method | TranscriptDb objects |
show-method | TranscriptDb objects |
supportedUCSCtables | Making a TranscriptDb object from annotations available at the UCSC Genome Browser |
threeUTRsByTranscript | Extract and group genomic features of a given type |
TranscriptDb | TranscriptDb objects |
TranscriptDb-class | TranscriptDb objects |
transcripts | Retrieving genomic features from a TranscriptDb object. |
transcriptsBy | Extract and group genomic features of a given type |
transcriptsByOverlaps | Retrieving genomic features from a TranscriptDb object using a restriction by genomic location. |
transcripts_deprecated | Functions that compute genomic regions of interest. |