GO-terms Semantic Similarity Measures


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Documentation for package ‘GOSemSim’ version 1.6.8

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GOSemSim-package Gene Ontology-based Sematic Similarity Measures
clusterSim Semantic Similarity Between Two Gene Clusters
geneSim Semantic Similarity Between two Genes
GOSemSim Gene Ontology-based Sematic Similarity Measures
goSim Semantic Similarity Between Two GO Terms
IC Information content of GO terms
Info_Contents_BP_anopheles Information content of GO terms
Info_Contents_BP_arabidopsis Information content of GO terms
Info_Contents_BP_bovine Information content of GO terms
Info_Contents_BP_canine Information content of GO terms
Info_Contents_BP_chicken Information content of GO terms
Info_Contents_BP_chimp Information content of GO terms
Info_Contents_BP_ecolik12 Information content of GO terms
Info_Contents_BP_ecsakai Information content of GO terms
Info_Contents_BP_fly Information content of GO terms
Info_Contents_BP_human Information content of GO terms
Info_Contents_BP_malaria Information content of GO terms
Info_Contents_BP_mouse Information content of GO terms
Info_Contents_BP_pig Information content of GO terms
Info_Contents_BP_rat Information content of GO terms
Info_Contents_BP_rhesus Information content of GO terms
Info_Contents_BP_worm Information content of GO terms
Info_Contents_BP_xenopus Information content of GO terms
Info_Contents_BP_yeast Information content of GO terms
Info_Contents_BP_zebrafish Information content of GO terms
Info_Contents_CC_anopheles Information content of GO terms
Info_Contents_CC_arabidopsis Information content of GO terms
Info_Contents_CC_bovine Information content of GO terms
Info_Contents_CC_canine Information content of GO terms
Info_Contents_CC_chicken Information content of GO terms
Info_Contents_CC_chimp Information content of GO terms
Info_Contents_CC_ecolik12 Information content of GO terms
Info_Contents_CC_ecsakai Information content of GO terms
Info_Contents_CC_fly Information content of GO terms
Info_Contents_CC_human Information content of GO terms
Info_Contents_CC_malaria Information content of GO terms
Info_Contents_CC_mouse Information content of GO terms
Info_Contents_CC_pig Information content of GO terms
Info_Contents_CC_rat Information content of GO terms
Info_Contents_CC_rhesus Information content of GO terms
Info_Contents_CC_worm Information content of GO terms
Info_Contents_CC_xenopus Information content of GO terms
Info_Contents_CC_yeast Information content of GO terms
Info_Contents_CC_zebrafish Information content of GO terms
Info_Contents_MF_anopheles Information content of GO terms
Info_Contents_MF_arabidopsis Information content of GO terms
Info_Contents_MF_bovine Information content of GO terms
Info_Contents_MF_canine Information content of GO terms
Info_Contents_MF_chicken Information content of GO terms
Info_Contents_MF_chimp Information content of GO terms
Info_Contents_MF_ecolik12 Information content of GO terms
Info_Contents_MF_ecsakai Information content of GO terms
Info_Contents_MF_fly Information content of GO terms
Info_Contents_MF_human Information content of GO terms
Info_Contents_MF_malaria Information content of GO terms
Info_Contents_MF_mouse Information content of GO terms
Info_Contents_MF_pig Information content of GO terms
Info_Contents_MF_rat Information content of GO terms
Info_Contents_MF_rhesus Information content of GO terms
Info_Contents_MF_worm Information content of GO terms
Info_Contents_MF_xenopus Information content of GO terms
Info_Contents_MF_yeast Information content of GO terms
Info_Contents_MF_zebrafish Information content of GO terms
mclusterSim Pairwise Semantic Similarities for a List of Gene Clusters
mgeneSim Pairwise Semantic Similarity for a List of Genes
mgoSim Semantic Similarity Between two GO terms lists