##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data spicyWorkflow
###
##############################################################################
##############################################################################


* checking for file ‘spicyWorkflow/DESCRIPTION’ ... OK
* preparing ‘spicyWorkflow’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘spicyWorkflow.Rmd’ using rmarkdown

Quitting from lines 447-460 [unnamed-chunk-13] (spicyWorkflow.Rmd)
Error: processing vignette 'spicyWorkflow.Rmd' failed with diagnostics:
✖ Specified (x) is not in `cells`.
ℹ `names(cells)`: imageID, object_id, s.area, s.radius.mean, m.cx, m.cy,
  m.majoraxis, m.eccentricity, Patient_ID, Status, Age, SUBTYPE, PAM50,
  Treatment, DCIS_grade, Necrosis, objectNum, and clusters
--- failed re-building ‘spicyWorkflow.Rmd’

SUMMARY: processing the following file failed:
  ‘spicyWorkflow.Rmd’

Error: Vignette re-building failed.
Execution halted