############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('sparseMatrixStats_1.17.2.tar.gz')" ### ############################################################################## ############################################################################## * Installing package... ─ sourceDir: /tmp/RtmpyVKmtY/file2c2bb87737feca/sparseMatrixStats ─ BiocVersion: 3.20 ─ Package: sparseMatrixStats ─ PackageVersion: 1.17.2 ─ BiocCheckDir: /home/biocbuild/bbs-3.19-bioc-testing/meat/sparseMatrixStats.BiocCheck ─ BiocCheckVersion: 1.41.4 ─ sourceDir: /tmp/RtmpyVKmtY/file2c2bb87737feca/sparseMatrixStats ─ installDir: /tmp/RtmpyVKmtY/file2c2bb850c6e052 ─ isTarBall: TRUE ─ platform: unix * Checking for deprecated package usage... * Checking for remote package usage... * Checking for 'LazyData: true' usage... * Checking version number... * Checking for version number mismatch... * Checking version number validity... * Checking R version dependency... * Checking package size... * Checking individual file sizes... * WARNING: Package files exceed the 5MB size limit. * Checking biocViews... * Checking that biocViews are present... * Checking package type based on biocViews... Software * Checking for non-trivial biocViews... * Checking that biocViews come from the same category... * Checking biocViews validity... * Checking for recommended biocViews... * Checking build system compatibility... * Checking for proper Description: field... * Checking if DESCRIPTION is well formatted... * Checking for whitespace in DESCRIPTION field names... * Checking that Package field matches directory/tarball name... * Checking for Version: field... * Checking License: for restrictive use... * Checking for recommended DESCRIPTION fields... * Checking for Bioconductor software dependencies... Bioconductor dependencies found in Imports & Depends (20%). * Checking for pinned package versions in DESCRIPTION... * Checking .Rbuildignore... * Checking for stray BiocCheck output folders... * Checking vignette directory... * Checking package installation calls in R code... * Checking for library/require of sparseMatrixStats... * Checking coding practice... * NOTE: Avoid redundant 'stop' and 'warn*' in signal conditions * Checking parsed R code in R directory, examples, vignettes... * NOTE: Avoid '<<-' if possible (found 1 times) * Checking function lengths... * Checking man page documentation... * Checking package NEWS... * Checking unit tests... * Checking skip_on_bioc() in tests... * Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and vignette source... * NOTE: Consider shorter lines; 181 lines (9%) are > 80 characters long. * NOTE: Consider multiples of 4 spaces for line indents; 657 lines (31%) are not. See https://contributions.bioconductor.org/r-code.html See styler package: https://cran.r-project.org/package=styler as described in the BiocCheck vignette. * Checking if package already exists in CRAN... * Checking for bioc-devel mailing list subscription... * NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel mailing list (requires admin credentials). Subscribe here: https://stat.ethz.ch/mailman/listinfo/bioc-devel * Checking for support site registration... Maintainer is registered at support site. Package is in the Support Site Watched Tags. ─ BiocCheck results ── 0 ERRORS | 1 WARNINGS | 5 NOTES See the sparseMatrixStats.BiocCheck folder and run browseVignettes(package = 'BiocCheck') for details.