############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('preprocessCore_1.67.0.tar.gz')" ### ############################################################################## ############################################################################## * Installing package... ─ sourceDir: /tmp/RtmpmYoJ6Q/file2ba06d2683011f/preprocessCore ─ BiocVersion: 3.20 ─ Package: preprocessCore ─ PackageVersion: 1.67.0 ─ BiocCheckDir: /home/biocbuild/bbs-3.19-bioc-testing/meat/preprocessCore.BiocCheck ─ BiocCheckVersion: 1.41.4 ─ sourceDir: /tmp/RtmpmYoJ6Q/file2ba06d2683011f/preprocessCore ─ installDir: /tmp/RtmpmYoJ6Q/file2ba06da7c1af ─ isTarBall: TRUE ─ platform: unix * Checking for deprecated package usage... * Checking for remote package usage... * Checking for 'LazyData: true' usage... * Checking version number... * Checking for version number mismatch... * Checking version number validity... * Checking R version dependency... * Checking package size... * Checking individual file sizes... * Checking biocViews... * Checking that biocViews are present... * Checking package type based on biocViews... Software * Checking for non-trivial biocViews... * Checking that biocViews come from the same category... * Checking biocViews validity... * Checking for recommended biocViews... No vignettes found. Warning in FUN(X[[i]], ...) : incomplete final line found on '/tmp/RtmpmYoJ6Q/file2ba06d2683011f/preprocessCore/man/colSummarize.Rd' Warning in FUN(X[[i]], ...) : incomplete final line found on '/tmp/RtmpmYoJ6Q/file2ba06d2683011f/preprocessCore/man/subColSummarize.Rd' * NOTE: Consider adding these automatically suggested biocViews: Preprocessing Search 'biocViews' at https://contributions.bioconductor.org * Checking build system compatibility... * Checking for proper Description: field... * Checking if DESCRIPTION is well formatted... * Checking for whitespace in DESCRIPTION field names... * Checking that Package field matches directory/tarball name... * Checking for Version: field... * ERROR: Remove Maintainer field. Use Authors@R [cre] designation. * Checking License: for restrictive use... * Checking for recommended DESCRIPTION fields... * NOTE: Provide 'BugReports' field(s) in DESCRIPTION * Checking for Bioconductor software dependencies... * NOTE: No Bioconductor dependencies detected. Note that some infrastructure packages may not have Bioconductor dependencies. For more information, reach out to the Bioconductor community and/or consider a CRAN submission. * Checking for pinned package versions in DESCRIPTION... * Checking .Rbuildignore... * Checking for stray BiocCheck output folders... * Checking vignette directory... * ERROR: No 'vignettes' directory. * Checking package installation calls in R code... * Checking for library/require of preprocessCore... * Checking coding practice... * NOTE: Avoid 1:...; use seq_len() or seq_along() * Checking parsed R code in R directory, examples, vignettes... * Checking function lengths... * NOTE: The recommended function length is 50 lines or less. There is 1 function greater than 50 lines. * Checking man page documentation... * ERROR: At least 80% of man pages documenting exported objects must have runnable examples. * Checking package NEWS... * NOTE: Consider adding a NEWS file, so your package news will be included in Bioconductor release announcements. * Checking unit tests... * Checking skip_on_bioc() in tests... * Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and vignette source... * NOTE: Consider shorter lines; 56 lines (3%) are > 80 characters long. * NOTE: Consider 4 spaces instead of tabs; 10 lines (1%) contain tabs. * NOTE: Consider multiples of 4 spaces for line indents; 575 lines (34%) are not. See https://contributions.bioconductor.org/r-code.html See styler package: https://cran.r-project.org/package=styler as described in the BiocCheck vignette. * Checking if package already exists in CRAN... * Checking for bioc-devel mailing list subscription... * NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel mailing list (requires admin credentials). Subscribe here: https://stat.ethz.ch/mailman/listinfo/bioc-devel * Checking for support site registration... Maintainer is registered at support site. * ERROR: Add package to Watched Tags in your Support Site profile; visit https://support.bioconductor.org/accounts/edit/profile ─ BiocCheck results ── 4 ERRORS | 0 WARNINGS | 10 NOTES See the preprocessCore.BiocCheck folder and run browseVignettes(package = 'BiocCheck') for details.