############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('impute_1.79.0.tar.gz')" ### ############################################################################## ############################################################################## * Installing package... ─ sourceDir: /tmp/RtmpVOqCbn/fileee7ed41c5e972/impute ─ BiocVersion: 3.20 ─ Package: impute ─ PackageVersion: 1.79.0 ─ BiocCheckDir: /home/biocbuild/bbs-3.19-bioc-testing/meat/impute.BiocCheck ─ BiocCheckVersion: 1.41.5 ─ sourceDir: /tmp/RtmpVOqCbn/fileee7ed41c5e972/impute ─ installDir: /tmp/RtmpVOqCbn/fileee7ed5383b472 ─ isTarBall: TRUE ─ platform: unix * Checking for deprecated package usage... * Checking for remote package usage... * Checking for 'LazyData: true' usage... * Checking version number... * Checking for version number mismatch... * Checking version number validity... * Checking R version dependency... * NOTE: Update R version dependency from 2.10 to 4.4.0. * Checking package size... * Checking individual file sizes... * Checking biocViews... * Checking that biocViews are present... * Checking package type based on biocViews... Software * Checking for non-trivial biocViews... * Checking that biocViews come from the same category... * Checking biocViews validity... * Checking for recommended biocViews... No vignettes found. * NOTE: Consider adding these automatically suggested biocViews: GeneExpression, GO, Clustering Search 'biocViews' at https://contributions.bioconductor.org * Checking build system compatibility... * Checking for proper Description: field... * Checking if DESCRIPTION is well formatted... * Checking for whitespace in DESCRIPTION field names... * Checking that Package field matches directory/tarball name... * Checking for Version: field... * ERROR: Remove Maintainer field. Use Authors@R [cre] designation. * Checking License: for restrictive use... * Checking for recommended DESCRIPTION fields... * NOTE: Provide 'URL', 'BugReports' field(s) in DESCRIPTION * Checking for Bioconductor software dependencies... * WARNING: No Bioconductor dependencies detected. Note that some infrastructure packages may not have Bioconductor dependencies. For more information, reach out to the Bioconductor community and/or consider a CRAN submission. * Checking for pinned package versions in DESCRIPTION... * Checking .Rbuildignore... * Checking for stray BiocCheck output folders... * Checking vignette directory... * ERROR: No 'vignettes' directory. * Checking package installation calls in R code... * Checking for library/require of impute... * Checking coding practice... * NOTE: Avoid 1:...; use seq_len() or seq_along() * NOTE: Avoid 'cat' and 'print' outside of 'show' methods * NOTE: Avoid using '=' for assignment and use '<-' instead * NOTE: Avoid the use of 'paste' in condition signals * WARNING: Remove set.seed usage (found 1 times) * Checking parsed R code in R directory, examples, vignettes... * Checking function lengths... * Checking man page documentation... * Checking package NEWS... * NOTE: Consider adding a NEWS file, so your package news will be included in Bioconductor release announcements. * Checking unit tests... * NOTE: Consider adding unit tests. We strongly encourage them. See https://contributions.bioconductor.org/tests.html * Checking skip_on_bioc() in tests... * Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and vignette source... * NOTE: Consider shorter lines; 9 lines (3%) are > 80 characters long. * NOTE: Consider multiples of 4 spaces for line indents; 183 lines (54%) are not. See https://contributions.bioconductor.org/r-code.html See styler package: https://cran.r-project.org/package=styler as described in the BiocCheck vignette. * Checking if package already exists in CRAN... * Checking for bioc-devel mailing list subscription... * NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel mailing list (requires admin credentials). Subscribe here: https://stat.ethz.ch/mailman/listinfo/bioc-devel * Checking for support site registration... Maintainer is registered at support site. Package is in the Support Site Watched Tags. ─ BiocCheck results ── 2 ERRORS | 2 WARNINGS | 12 NOTES See the impute.BiocCheck folder and run browseVignettes(package = 'BiocCheck') for details.