############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL Rarr ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘Rarr’ ... ** using staged installation NO_RLIB= R_CPPFLAGS=-I/Library/Frameworks/R.framework/Resources/include configure: is Bioc build machine configure: configuring the Zstd filter... configure: compiling bundled Zstd library configure: configuring the BLOSC filter... configure: compiling bundled BLOSC library checking whether C compiler accepts -msse2... no configure: Bioc build machine; disabling MAVX2 configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/compression_tools/blosc/lib/blosc-1.20.1/Makefile config.status: creating src/compression_tools/blosc/Makefile config.status: creating src/compression_tools/blosc/lib/snappy-1.1.1/Makefile ** libs using C compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’ using SDK: ‘MacOSX11.3.sdk’ clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include -falign-functions=64 -Wall -g -O2 -fPIC -falign-functions=64 -Wall -g -O2 -c Rarr.c -o Rarr.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include -falign-functions=64 -Wall -g -O2 -fPIC -falign-functions=64 -Wall -g -O2 -c bit64_conversion.c -o bit64_conversion.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include -falign-functions=64 -Wall -g -O2 -fPIC -falign-functions=64 -Wall -g -O2 -c compress.c -o compress.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include -falign-functions=64 -Wall -g -O2 -fPIC -falign-functions=64 -Wall -g -O2 -c decompress.c -o decompress.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include -falign-functions=64 -Wall -g -O2 -fPIC -falign-functions=64 -Wall -g -O2 -c float16_conversion.c -o float16_conversion.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include -falign-functions=64 -Wall -g -O2 -fPIC -falign-functions=64 -Wall -g -O2 -c type_conversion.c -o type_conversion.o make -C compression_tools/zstd clang -arch arm64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/debug.c -o common/debug.o clang -arch arm64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/entropy_common.c -o common/entropy_common.o clang -arch arm64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/error_private.c -o common/error_private.o clang -arch arm64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/fse_decompress.c -o common/fse_decompress.o clang -arch arm64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/pool.c -o common/pool.o -o common/pool.o clang -arch arm64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/threading.c -o common/threading.o clang -arch arm64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/xxhash.c -o common/xxhash.o clang -arch arm64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/zstd_common.c -o common/zstd_common.o clang -arch arm64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/fse_compress.c -o compress/fse_compress.o clang -arch arm64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/hist.c -o compress/hist.o clang -arch arm64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/huf_compress.c -o compress/huf_compress.o clang -arch arm64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_compress.c -o compress/zstd_compress.o clang -arch arm64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_compress_literals.c -o compress/zstd_compress_literals.o clang -arch arm64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_compress_sequences.c -o compress/zstd_compress_sequences.o clang -arch arm64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_compress_superblock.c -o compress/zstd_compress_superblock.o clang -arch arm64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_double_fast.c -o compress/zstd_double_fast.o clang -arch arm64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_fast.c -o compress/zstd_fast.o clang -arch arm64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_lazy.c -o compress/zstd_lazy.o clang -arch arm64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_ldm.c -o compress/zstd_ldm.o clang -arch arm64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_opt.c -o compress/zstd_opt.o clang -arch arm64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstdmt_compress.c -o compress/zstdmt_compress.o clang -arch arm64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c decompress/huf_decompress.c -o decompress/huf_decompress.o clang -arch arm64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c decompress/zstd_ddict.c -o decompress/zstd_ddict.o clang -arch arm64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c decompress/zstd_decompress.c -o decompress/zstd_decompress.o clang -arch arm64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c decompress/zstd_decompress_block.c -o decompress/zstd_decompress_block.o rm -f libzstd.a ar cq libzstd.a common/debug.o common/entropy_common.o common/error_private.o common/fse_decompress.o common/pool.o common/threading.o common/xxhash.o common/zstd_common.o compress/fse_compress.o compress/hist.o compress/huf_compress.o compress/zstd_compress.o compress/zstd_compress_literals.o compress/zstd_compress_sequences.o compress/zstd_compress_superblock.o compress/zstd_double_fast.o compress/zstd_fast.o compress/zstd_lazy.o compress/zstd_ldm.o compress/zstd_opt.o compress/zstdmt_compress.o decompress/huf_decompress.o decompress/zstd_ddict.o decompress/zstd_decompress.o decompress/zstd_decompress_block.o ranlib libzstd.a make -C compression_tools/blosc make -C lib/snappy-1.1.1 clang++ -arch arm64 -std=gnu++17 -falign-functions=64 -Wall -g -O2 -fPIC -I/opt/R/arm64/include -I/Library/Frameworks/R.framework/Resources/include -DUSING_R -c snappy.cc snappy.cc:578:13: warning: unused function 'ComputeTable' [-Wunused-function] static void ComputeTable() { ^ 1 warning generated. clang++ -arch arm64 -std=gnu++17 -falign-functions=64 -Wall -g -O2 -fPIC -I/opt/R/arm64/include -I/Library/Frameworks/R.framework/Resources/include -DUSING_R -c snappy-c.cc clang++ -arch arm64 -std=gnu++17 -falign-functions=64 -Wall -g -O2 -fPIC -I/opt/R/arm64/include -I/Library/Frameworks/R.framework/Resources/include -DUSING_R -c snappy-sinksource.cc clang++ -arch arm64 -std=gnu++17 -falign-functions=64 -Wall -g -O2 -fPIC -I/opt/R/arm64/include -I/Library/Frameworks/R.framework/Resources/include -DUSING_R -c snappy-stubs-internal.cc make -C lib/lz4-1.9.2 clang -arch arm64 -falign-functions=64 -Wall -g -O2 -fPIC -DNLZ4_DEBUG -c lz4.c clang -arch arm64 -falign-functions=64 -Wall -g -O2 -fPIC -DNLZ4_DEBUG -c lz4hc.c make -C lib/blosc-1.20.1 all clang -arch arm64 -falign-functions=64 -Wall -g -O2 -fPIC -I/opt/R/arm64/include -I/Library/Frameworks/R.framework/Resources/include -I../lz4-1.9.2 -I../snappy-1.1.1 -I../../../zstd -DUSING_R -c bitshuffle-generic.c clang -arch arm64 -falign-functions=64 -Wall -g -O2 -fPIC -I/opt/R/arm64/include -I/Library/Frameworks/R.framework/Resources/include -I../lz4-1.9.2 -I../snappy-1.1.1 -I../../../zstd -DUSING_R -c shuffle-generic.c clang -arch arm64 -falign-functions=64 -Wall -g -O2 -fPIC -I/opt/R/arm64/include -I/Library/Frameworks/R.framework/Resources/include -I../lz4-1.9.2 -I../snappy-1.1.1 -I../../../zstd -DUSING_R -c shuffle.c shuffle.c:316:22: warning: unused variable 'cpu_features' [-Wunused-variable] blosc_cpu_features cpu_features = blosc_get_cpu_features(); ^ In file included from shuffle.c:12: ./shuffle-generic.h:32:13: warning: unused function 'shuffle_generic_inline' [-Wunused-function] static void shuffle_generic_inline(const size_t type_size, ^ ./shuffle-generic.h:61:13: warning: unused function 'unshuffle_generic_inline' [-Wunused-function] static void unshuffle_generic_inline(const size_t type_size, ^ 3 warnings generated. clang -arch arm64 -falign-functions=64 -Wall -g -O2 -fPIC -I/opt/R/arm64/include -I/Library/Frameworks/R.framework/Resources/include -I../lz4-1.9.2 -I../snappy-1.1.1 -I../../../zstd -DUSING_R -c blosclz.c clang -arch arm64 -falign-functions=64 -Wall -g -O2 -fPIC -I/opt/R/arm64/include -I/Library/Frameworks/R.framework/Resources/include -I../lz4-1.9.2 -I../snappy-1.1.1 -I../../../zstd -DUSING_R -c blosc.c blosc.c:742:11: warning: variable 'ctbytes' set but not used [-Wunused-but-set-variable] int32_t ctbytes = 0; /* number of compressed bytes in block */ ^ blosc.c:303:12: warning: unused function 'compname_to_clibcode' [-Wunused-function] static int compname_to_clibcode(const char *compname) ^ 2 warnings generated. clang -arch arm64 -falign-functions=64 -Wall -g -O2 -fPIC -I/opt/R/arm64/include -I/Library/Frameworks/R.framework/Resources/include -I../lz4-1.9.2 -I../snappy-1.1.1 -I../../../zstd -DUSING_R -c fastcopy.c fastcopy.c:69:30: warning: unused function 'copy_5_bytes' [-Wunused-function] static inline unsigned char *copy_5_bytes(unsigned char *out, const unsigned char *from) { ^ fastcopy.c:74:30: warning: unused function 'copy_6_bytes' [-Wunused-function] static inline unsigned char *copy_6_bytes(unsigned char *out, const unsigned char *from) { ^ fastcopy.c:79:30: warning: unused function 'copy_7_bytes' [-Wunused-function] static inline unsigned char *copy_7_bytes(unsigned char *out, const unsigned char *from) { ^ 3 warnings generated. rm -f libblosc.a ar cq libblosc.a lib/blosc-1.20.1/blosc.o lib/blosc-1.20.1/bitshuffle-generic.o lib/blosc-1.20.1/blosclz.o lib/blosc-1.20.1/shuffle.o lib/blosc-1.20.1/fastcopy.o lib/blosc-1.20.1/shuffle-generic.o lib/snappy-1.1.1/snappy.o lib/snappy-1.1.1/snappy-c.o lib/snappy-1.1.1/snappy-sinksource.o lib/snappy-1.1.1/snappy-stubs-internal.o lib/lz4-1.9.2/lz4.o lib/lz4-1.9.2/lz4hc.o ranlib libblosc.a clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o Rarr.so Rarr.o bit64_conversion.o compress.o decompress.o float16_conversion.o type_conversion.o ./compression_tools/blosc/libblosc.a ./compression_tools/zstd/libzstd.a -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/00LOCK-Rarr/00new/Rarr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rarr)