############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no TENxIO_1.6.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.19-bioc-longtests/meat/TENxIO.Rcheck’ * using R version 4.4.0 (2024-04-24) * using platform: x86_64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.7.4 * using session charset: UTF-8 * using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’ * checking for file ‘TENxIO/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘TENxIO’ version ‘1.6.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘TENxIO’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... SKIPPED * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... SKIPPED * checking examples ... SKIPPED * checking for unstated dependencies in ‘longtests’ ... OK * checking tests in ‘longtests’ ... Running ‘tinytest.R’ ERROR Running the tests in ‘longtests/tinytest.R’ failed. Last 13 lines of output: test_TENxH5.R................. 0 tests test_TENxH5.R................. 1 tests OK test_TENxH5.R................. 2 tests OK test_TENxH5.R................. 3 tests OK see ?DropletTestFiles and browseVignettes('DropletTestFiles') for documentation loading from cache test_TENxH5.R................. 3 tests OK test_TENxH5.R................. 4 tests OK test_TENxH5.R................. 5 tests OK test_TENxH5.R................. 6 tests 1 fails 15.2s ----- FAILED[data]: test_TENxH5.R<32--37> call| expect_true(is(import(res), "SingleCellExperiment")) diff| Expected TRUE, got FALSE Error: 1 out of 6 tests failed Execution halted * DONE Status: 1 ERROR See ‘/Users/biocbuild/bbs-3.19-bioc-longtests/meat/TENxIO.Rcheck/00check.log’ for details.