############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ttgsea ### ############################################################################## ############################################################################## * checking for file ‘ttgsea/DESCRIPTION’ ... OK * preparing ‘ttgsea’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘ttgsea.Rmd’ using rmarkdown /Users/biocbuild/Library/Python/3.9/lib/python/site-packages/urllib3/__init__.py:35: NotOpenSSLWarning: urllib3 v2 only supports OpenSSL 1.1.1+, currently the 'ssl' module is compiled with 'LibreSSL 2.8.3'. See: https://github.com/urllib3/urllib3/issues/3020 warnings.warn( Quitting from lines 90-117 [unnamed-chunk-2] (ttgsea.Rmd) Error: processing vignette 'ttgsea.Rmd' failed with diagnostics: ValueError: Unrecognized keyword arguments passed to Embedding: {'input_length': 30} Run `reticulate::py_last_error()` for details. --- failed re-building ‘ttgsea.Rmd’ SUMMARY: processing the following file failed: ‘ttgsea.Rmd’ Error: Vignette re-building failed. Execution halted