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### Running command:
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###   F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:sesame.install-out.txt --library=F:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings sesame_1.22.2.tar.gz
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* using log directory 'F:/biocbuild/bbs-3.19-bioc/meat/sesame.Rcheck'
* using R version 4.4.1 (2024-06-14 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'sesame/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'sesame' version '1.22.2'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'sesame' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                user system elapsed
testEnrichmentGene            127.05   6.36  191.01
imputeBetasByGenomicNeighbors  42.81   1.98   60.45
sesameQC_calcStats             30.37   2.58   32.99
inferSex                       29.62   1.39   31.10
KYCG_plotMeta                  29.66   1.18   33.49
imputeBetas                    25.29   2.44   72.10
sesameQC_plotHeatSNPs          24.49   2.59   27.18
KYCG_plotEnrichAll             20.53   1.36   28.06
inferSpecies                   18.61   1.30   25.75
sdf_read_table                 18.22   0.71   19.16
ELBAR                          17.14   1.66   20.27
sesameQC_plotBar               16.35   1.10   27.55
KYCG_annoProbes                16.56   0.89   21.67
matchDesign                    16.32   0.69   17.11
diffRefSet                     15.89   0.53   22.61
compareMouseStrainReference    14.25   0.86   16.63
sesameQC_plotBetaByDesign      12.93   2.14   15.05
getRefSet                      14.48   0.55   15.23
KYCG_plotMetaEnrichment        13.82   0.59   14.68
KYCG_buildGeneDBs              13.36   0.78   19.43
compareReference               12.60   0.75   13.43
DML                            10.63   2.58   49.50
inferStrain                    11.28   1.37   12.70
testEnrichmentSEA              11.63   0.92   12.72
sdf_write_table                12.22   0.29   12.56
visualizeGene                  11.41   0.66   12.59
DMR                             9.61   0.39   11.44
estimateLeukocyte               8.80   0.54   15.02
inferTissue                     8.08   1.05    9.31
getMask                         8.27   0.79   10.30
dyeBiasCorrMostBalanced         7.70   0.48   17.17
dbStats                         7.00   0.84   14.36
createUCSCtrack                 6.89   0.53    9.71
KYCG_plotSetEnrichment          6.81   0.56    7.99
dyeBiasNL                       6.37   0.66    7.06
openSesame                      5.89   0.82    7.47
deidentify                      5.97   0.55    6.80
scrubSoft                       5.36   0.97    6.33
testEnrichment                  5.57   0.66    6.39
prepSesame                      5.35   0.63    6.00
bisConversionControl            5.66   0.31   10.06
probeSuccessRate                5.47   0.47    6.08
visualizeProbes                 5.31   0.09    5.41
sesameQC_rankStats              3.75   0.64    6.06
checkLevels                     3.80   0.33    6.72
updateSigDF                     3.50   0.52    5.88
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK