############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD build --keep-empty-dirs --no-resave-data scviR ### ############################################################################## ############################################################################## * checking for file ‘scviR/DESCRIPTION’ ... OK * preparing ‘scviR’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘citeseq_tut.Rmd’ using rmarkdown Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /home/biocbuild/.cache/R/basilisk/1.16.0/scviR/1.4.0/bsklenv added / updated specs: - python=3.10 The following NEW packages will be INSTALLED: _openmp_mutex conda-forge/linux-aarch64::_openmp_mutex-4.5-2_gnu bzip2 conda-forge/linux-aarch64::bzip2-1.0.8-h31becfc_5 ca-certificates conda-forge/linux-aarch64::ca-certificates-2024.2.2-hcefe29a_0 ld_impl_linux-aar~ conda-forge/linux-aarch64::ld_impl_linux-aarch64-2.40-hba4e955_0 libffi conda-forge/linux-aarch64::libffi-3.4.2-h3557bc0_5 libgcc-ng conda-forge/linux-aarch64::libgcc-ng-13.2.0-he277a41_7 libgomp conda-forge/linux-aarch64::libgomp-13.2.0-he277a41_7 libnsl conda-forge/linux-aarch64::libnsl-2.0.1-h31becfc_0 libsqlite conda-forge/linux-aarch64::libsqlite-3.45.3-h194ca79_0 libuuid conda-forge/linux-aarch64::libuuid-2.38.1-hb4cce97_0 libxcrypt conda-forge/linux-aarch64::libxcrypt-4.4.36-h31becfc_1 libzlib conda-forge/linux-aarch64::libzlib-1.2.13-h31becfc_5 ncurses conda-forge/linux-aarch64::ncurses-6.5-h0425590_0 openssl conda-forge/linux-aarch64::openssl-3.3.0-h31becfc_0 pip conda-forge/noarch::pip-24.0-pyhd8ed1ab_0 python conda-forge/linux-aarch64::python-3.10.14-hbbe8eec_0_cpython readline conda-forge/linux-aarch64::readline-8.2-h8fc344f_1 setuptools conda-forge/noarch::setuptools-69.5.1-pyhd8ed1ab_0 tk conda-forge/linux-aarch64::tk-8.6.13-h194ca79_0 tzdata conda-forge/noarch::tzdata-2024a-h0c530f3_0 wheel conda-forge/noarch::wheel-0.43.0-pyhd8ed1ab_1 xz conda-forge/linux-aarch64::xz-5.2.6-h9cdd2b7_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.12.0 latest version: 24.4.0 Please update conda by running $ conda update -n base -c defaults conda # All requested packages already installed. Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.12.0 latest version: 24.4.0 Please update conda by running $ conda update -n base -c defaults conda ## Package Plan ## environment location: /home/biocbuild/.cache/R/basilisk/1.16.0/scviR/1.4.0/bsklenv added / updated specs: - numpy=1.24.4 - pandas=1.5.3 - python[version='3.10.*,3.10.*'] The following NEW packages will be INSTALLED: bottleneck conda-forge/linux-aarch64::bottleneck-1.3.8-py310h8b6b5fc_0 libblas conda-forge/linux-aarch64::libblas-3.9.0-22_linuxaarch64_openblas libcblas conda-forge/linux-aarch64::libcblas-3.9.0-22_linuxaarch64_openblas libgfortran-ng conda-forge/linux-aarch64::libgfortran-ng-13.2.0-he9431aa_7 libgfortran5 conda-forge/linux-aarch64::libgfortran5-13.2.0-h87d9d71_7 liblapack conda-forge/linux-aarch64::liblapack-3.9.0-22_linuxaarch64_openblas libopenblas conda-forge/linux-aarch64::libopenblas-0.3.27-pthreads_h5a5ec62_0 libstdcxx-ng conda-forge/linux-aarch64::libstdcxx-ng-13.2.0-h3f4de04_7 numexpr conda-forge/linux-aarch64::numexpr-2.9.0-py310had05d37_0 numpy conda-forge/linux-aarch64::numpy-1.24.4-py310h7f380f4_0 pandas pkgs/main/linux-aarch64::pandas-1.5.3-py310hfb1e5ee_0 python-dateutil conda-forge/noarch::python-dateutil-2.9.0-pyhd8ed1ab_0 python_abi conda-forge/linux-aarch64::python_abi-3.10-4_cp310 pytz conda-forge/noarch::pytz-2024.1-pyhd8ed1ab_0 six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Collecting anndata==0.10.1 Using cached anndata-0.10.1-py3-none-any.whl.metadata (6.4 kB) Collecting docrep==0.3.2 Using cached docrep-0.3.2.tar.gz (33 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting flax==0.8.1 Using cached flax-0.8.1-py3-none-any.whl.metadata (10 kB) Collecting jax==0.4.23 Using cached jax-0.4.23-py3-none-any.whl.metadata (24 kB) Collecting jaxlib==0.4.23 Using cached jaxlib-0.4.23-cp310-cp310-manylinux2014_aarch64.whl.metadata (2.1 kB) Collecting optax==0.1.9 Using cached optax-0.1.9-py3-none-any.whl.metadata (6.7 kB) Collecting scipy==1.12.0 Using cached scipy-1.12.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl.metadata (112 kB) Collecting scikit-learn==1.4.0 Using cached scikit_learn-1.4.0-1-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl.metadata (11 kB) Collecting rich==13.7.1 Using cached rich-13.7.1-py3-none-any.whl.metadata (18 kB) Collecting h5py==3.9.0 Using cached h5py-3.9.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl.metadata (2.5 kB) Collecting torch==1.13.1 Using cached torch-1.13.1-cp310-cp310-manylinux2014_aarch64.whl.metadata (23 kB) Collecting lightning==2.1.4 Using cached lightning-2.1.4-py3-none-any.whl.metadata (57 kB) Collecting torchmetrics==0.11.0 Using cached torchmetrics-0.11.0-py3-none-any.whl.metadata (16 kB) Collecting tqdm==4.66.2 Using cached tqdm-4.66.2-py3-none-any.whl.metadata (57 kB) Collecting ml-collections==0.1.1 Using cached ml_collections-0.1.1.tar.gz (77 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting mudata==0.2.3 Using cached mudata-0.2.3-py3-none-any.whl.metadata (4.7 kB) Collecting scvi-tools==1.1.2 Using cached scvi_tools-1.1.2-py3-none-any.whl.metadata (12 kB) Collecting scanpy==1.9.5 Using cached scanpy-1.9.5-py3-none-any.whl.metadata (5.9 kB) Collecting matplotlib==3.7.3 Using cached matplotlib-3.7.3-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl.metadata (5.7 kB) Collecting scikit-misc==0.3.1 Using cached scikit_misc-0.3.1.tar.gz (302 kB) Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Installing backend dependencies: started Installing backend dependencies: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'error' error: subprocess-exited-with-error × Preparing metadata (pyproject.toml) did not run successfully. │ exit code: 1 ╰─> [59 lines of output] + meson setup /home/biocbuild/tmp/pip-install-ur2zxn37/scikit-misc_f060fdbacfa34075b111a46c67d90140 /home/biocbuild/tmp/pip-install-ur2zxn37/scikit-misc_f060fdbacfa34075b111a46c67d90140/.mesonpy-7i9l5e38 -Dbuildtype=release -Db_ndebug=if-release -Db_vscrt=md --native-file=/home/biocbuild/tmp/pip-install-ur2zxn37/scikit-misc_f060fdbacfa34075b111a46c67d90140/.mesonpy-7i9l5e38/meson-python-native-file.ini The Meson build system Version: 1.4.0 Source dir: /home/biocbuild/tmp/pip-install-ur2zxn37/scikit-misc_f060fdbacfa34075b111a46c67d90140 Build dir: /home/biocbuild/tmp/pip-install-ur2zxn37/scikit-misc_f060fdbacfa34075b111a46c67d90140/.mesonpy-7i9l5e38 Build type: native build Project name: scikit-misc Project version: 0.3.1 C compiler for the host machine: cc (gcc 10.3.1 "cc (GCC) 10.3.1") C linker for the host machine: cc ld.bfd 2.37 Cython compiler for the host machine: cython (cython 3.0.10) Host machine cpu family: aarch64 Host machine cpu: aarch64 Fortran compiler for the host machine: gfortran (gcc 10.3.1 "GNU Fortran (GCC) 10.3.1") Fortran linker for the host machine: gfortran ld.bfd 2.37 Program python found: YES (/home/biocbuild/.cache/R/basilisk/1.16.0/scviR/1.4.0/bsklenv/bin/python) Found pkg-config: YES (/usr/bin/pkg-config) 1.8.0 Run-time dependency python found: YES 3.10 Program cython found: YES (/home/biocbuild/tmp/pip-build-env-239ceebm/overlay/bin/cython) Library m found: YES Compiler for Fortran supports arguments -Wno-conversion: YES Library npymath found: YES Library npyrandom found: YES Compiler for C supports arguments -Wno-maybe-uninitialized: YES Compiler for C supports arguments -Wno-discarded-qualifiers: YES Compiler for C supports arguments -Wno-empty-body: YES Compiler for C supports arguments -Wno-implicit-function-declaration: YES Compiler for C supports arguments -Wno-parentheses: YES Compiler for C supports arguments -Wno-switch: YES Compiler for C supports arguments -Wno-unused-result: YES Compiler for C supports arguments -Wno-unused-label: YES Compiler for C supports arguments -Wno-unused-variable: YES Compiler for Fortran supports arguments -Wno-argument-mismatch: YES Compiler for Fortran supports arguments -Wno-conversion: YES (cached) Compiler for Fortran supports arguments -Wno-intrinsic-shadow: YES Compiler for Fortran supports arguments -Wno-maybe-uninitialized: YES Compiler for Fortran supports arguments -Wno-surprising: YES Compiler for Fortran supports arguments -Wno-uninitialized: YES Compiler for Fortran supports arguments -Wno-unused-dummy-argument: YES Compiler for Fortran supports arguments -Wno-unused-label: YES Compiler for Fortran supports arguments -Wno-unused-variable: YES Compiler for Fortran supports arguments -Wno-tabs: YES Compiler for Fortran supports arguments -Wno-argument-mismatch: YES (cached) Compiler for Fortran supports arguments -Wno-conversion: YES (cached) Compiler for Fortran supports arguments -Wno-maybe-uninitialized: YES (cached) Compiler for Fortran supports arguments -Wno-unused-dummy-argument: YES (cached) Compiler for Fortran supports arguments -Wno-unused-label: YES (cached) Compiler for Fortran supports arguments -Wno-unused-variable: YES (cached) Compiler for Fortran supports arguments -Wno-tabs: YES (cached) Compiler for C supports link arguments -Wl,-no_compact_unwind: NO Compiler for C supports link arguments -Wl,-no_fixup_chains: NO Found CMake: /usr/bin/cmake (3.22.0) WARNING: CMake Toolchain: Failed to determine CMake compilers state Run-time dependency openblas found: NO (tried pkgconfig and cmake) Run-time dependency openblas found: NO (tried pkgconfig and cmake) ../skmisc/meson.build:173:9: ERROR: Dependency "OpenBLAS" not found, tried pkgconfig and cmake A full log can be found at /home/biocbuild/tmp/pip-install-ur2zxn37/scikit-misc_f060fdbacfa34075b111a46c67d90140/.mesonpy-7i9l5e38/meson-logs/meson-log.txt [end of output] note: This error originates from a subprocess, and is likely not a problem with pip. error: metadata-generation-failed × Encountered error while generating package metadata. ╰─> See above for output. note: This is an issue with the package mentioned above, not pip. hint: See above for details. Quitting from lines at lines 43-48 [doinit] (citeseq_tut.Rmd) Error: processing vignette 'citeseq_tut.Rmd' failed with diagnostics: failed to install additional packages via pip --- failed re-building ‘citeseq_tut.Rmd’ --- re-building ‘compch12.Rmd’ using rmarkdown Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /home/biocbuild/.cache/R/basilisk/1.16.0/scviR/1.4.0/bsklenv added / updated specs: - python=3.10 The following NEW packages will be INSTALLED: _openmp_mutex conda-forge/linux-aarch64::_openmp_mutex-4.5-2_gnu bzip2 conda-forge/linux-aarch64::bzip2-1.0.8-h31becfc_5 ca-certificates conda-forge/linux-aarch64::ca-certificates-2024.2.2-hcefe29a_0 ld_impl_linux-aar~ conda-forge/linux-aarch64::ld_impl_linux-aarch64-2.40-hba4e955_0 libffi conda-forge/linux-aarch64::libffi-3.4.2-h3557bc0_5 libgcc-ng conda-forge/linux-aarch64::libgcc-ng-13.2.0-he277a41_7 libgomp conda-forge/linux-aarch64::libgomp-13.2.0-he277a41_7 libnsl conda-forge/linux-aarch64::libnsl-2.0.1-h31becfc_0 libsqlite conda-forge/linux-aarch64::libsqlite-3.45.3-h194ca79_0 libuuid conda-forge/linux-aarch64::libuuid-2.38.1-hb4cce97_0 libxcrypt conda-forge/linux-aarch64::libxcrypt-4.4.36-h31becfc_1 libzlib conda-forge/linux-aarch64::libzlib-1.2.13-h31becfc_5 ncurses conda-forge/linux-aarch64::ncurses-6.5-h0425590_0 openssl conda-forge/linux-aarch64::openssl-3.3.0-h31becfc_0 pip conda-forge/noarch::pip-24.0-pyhd8ed1ab_0 python conda-forge/linux-aarch64::python-3.10.14-hbbe8eec_0_cpython readline conda-forge/linux-aarch64::readline-8.2-h8fc344f_1 setuptools conda-forge/noarch::setuptools-69.5.1-pyhd8ed1ab_0 tk conda-forge/linux-aarch64::tk-8.6.13-h194ca79_0 tzdata conda-forge/noarch::tzdata-2024a-h0c530f3_0 wheel conda-forge/noarch::wheel-0.43.0-pyhd8ed1ab_1 xz conda-forge/linux-aarch64::xz-5.2.6-h9cdd2b7_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.12.0 latest version: 24.4.0 Please update conda by running $ conda update -n base -c defaults conda # All requested packages already installed. Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.12.0 latest version: 24.4.0 Please update conda by running $ conda update -n base -c defaults conda ## Package Plan ## environment location: /home/biocbuild/.cache/R/basilisk/1.16.0/scviR/1.4.0/bsklenv added / updated specs: - numpy=1.24.4 - pandas=1.5.3 - python[version='3.10.*,3.10.*'] The following NEW packages will be INSTALLED: bottleneck conda-forge/linux-aarch64::bottleneck-1.3.8-py310h8b6b5fc_0 libblas conda-forge/linux-aarch64::libblas-3.9.0-22_linuxaarch64_openblas libcblas conda-forge/linux-aarch64::libcblas-3.9.0-22_linuxaarch64_openblas libgfortran-ng conda-forge/linux-aarch64::libgfortran-ng-13.2.0-he9431aa_7 libgfortran5 conda-forge/linux-aarch64::libgfortran5-13.2.0-h87d9d71_7 liblapack conda-forge/linux-aarch64::liblapack-3.9.0-22_linuxaarch64_openblas libopenblas conda-forge/linux-aarch64::libopenblas-0.3.27-pthreads_h5a5ec62_0 libstdcxx-ng conda-forge/linux-aarch64::libstdcxx-ng-13.2.0-h3f4de04_7 numexpr conda-forge/linux-aarch64::numexpr-2.9.0-py310had05d37_0 numpy conda-forge/linux-aarch64::numpy-1.24.4-py310h7f380f4_0 pandas pkgs/main/linux-aarch64::pandas-1.5.3-py310hfb1e5ee_0 python-dateutil conda-forge/noarch::python-dateutil-2.9.0-pyhd8ed1ab_0 python_abi conda-forge/linux-aarch64::python_abi-3.10-4_cp310 pytz conda-forge/noarch::pytz-2024.1-pyhd8ed1ab_0 six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Collecting anndata==0.10.1 Using cached anndata-0.10.1-py3-none-any.whl.metadata (6.4 kB) Collecting docrep==0.3.2 Using cached docrep-0.3.2.tar.gz (33 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting flax==0.8.1 Using cached flax-0.8.1-py3-none-any.whl.metadata (10 kB) Collecting jax==0.4.23 Using cached jax-0.4.23-py3-none-any.whl.metadata (24 kB) Collecting jaxlib==0.4.23 Using cached jaxlib-0.4.23-cp310-cp310-manylinux2014_aarch64.whl.metadata (2.1 kB) Collecting optax==0.1.9 Using cached optax-0.1.9-py3-none-any.whl.metadata (6.7 kB) Collecting scipy==1.12.0 Using cached scipy-1.12.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl.metadata (112 kB) Collecting scikit-learn==1.4.0 Using cached scikit_learn-1.4.0-1-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl.metadata (11 kB) Collecting rich==13.7.1 Using cached rich-13.7.1-py3-none-any.whl.metadata (18 kB) Collecting h5py==3.9.0 Using cached h5py-3.9.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl.metadata (2.5 kB) Collecting torch==1.13.1 Using cached torch-1.13.1-cp310-cp310-manylinux2014_aarch64.whl.metadata (23 kB) Collecting lightning==2.1.4 Using cached lightning-2.1.4-py3-none-any.whl.metadata (57 kB) Collecting torchmetrics==0.11.0 Using cached torchmetrics-0.11.0-py3-none-any.whl.metadata (16 kB) Collecting tqdm==4.66.2 Using cached tqdm-4.66.2-py3-none-any.whl.metadata (57 kB) Collecting ml-collections==0.1.1 Using cached ml_collections-0.1.1.tar.gz (77 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting mudata==0.2.3 Using cached mudata-0.2.3-py3-none-any.whl.metadata (4.7 kB) Collecting scvi-tools==1.1.2 Using cached scvi_tools-1.1.2-py3-none-any.whl.metadata (12 kB) Collecting scanpy==1.9.5 Using cached scanpy-1.9.5-py3-none-any.whl.metadata (5.9 kB) Collecting matplotlib==3.7.3 Using cached matplotlib-3.7.3-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl.metadata (5.7 kB) Collecting scikit-misc==0.3.1 Using cached scikit_misc-0.3.1.tar.gz (302 kB) Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Installing backend dependencies: started Installing backend dependencies: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'error' error: subprocess-exited-with-error × Preparing metadata (pyproject.toml) did not run successfully. │ exit code: 1 ╰─> [59 lines of output] + meson setup /home/biocbuild/tmp/pip-install-27ldida5/scikit-misc_4996df2e2f72406c9519be2c3a252051 /home/biocbuild/tmp/pip-install-27ldida5/scikit-misc_4996df2e2f72406c9519be2c3a252051/.mesonpy-187o8n43 -Dbuildtype=release -Db_ndebug=if-release -Db_vscrt=md --native-file=/home/biocbuild/tmp/pip-install-27ldida5/scikit-misc_4996df2e2f72406c9519be2c3a252051/.mesonpy-187o8n43/meson-python-native-file.ini The Meson build system Version: 1.4.0 Source dir: /home/biocbuild/tmp/pip-install-27ldida5/scikit-misc_4996df2e2f72406c9519be2c3a252051 Build dir: /home/biocbuild/tmp/pip-install-27ldida5/scikit-misc_4996df2e2f72406c9519be2c3a252051/.mesonpy-187o8n43 Build type: native build Project name: scikit-misc Project version: 0.3.1 C compiler for the host machine: cc (gcc 10.3.1 "cc (GCC) 10.3.1") C linker for the host machine: cc ld.bfd 2.37 Cython compiler for the host machine: cython (cython 3.0.10) Host machine cpu family: aarch64 Host machine cpu: aarch64 Fortran compiler for the host machine: gfortran (gcc 10.3.1 "GNU Fortran (GCC) 10.3.1") Fortran linker for the host machine: gfortran ld.bfd 2.37 Program python found: YES (/home/biocbuild/.cache/R/basilisk/1.16.0/scviR/1.4.0/bsklenv/bin/python) Found pkg-config: YES (/usr/bin/pkg-config) 1.8.0 Run-time dependency python found: YES 3.10 Program cython found: YES (/home/biocbuild/tmp/pip-build-env-4hr3pqqw/overlay/bin/cython) Library m found: YES Compiler for Fortran supports arguments -Wno-conversion: YES Library npymath found: YES Library npyrandom found: YES Compiler for C supports arguments -Wno-maybe-uninitialized: YES Compiler for C supports arguments -Wno-discarded-qualifiers: YES Compiler for C supports arguments -Wno-empty-body: YES Compiler for C supports arguments -Wno-implicit-function-declaration: YES Compiler for C supports arguments -Wno-parentheses: YES Compiler for C supports arguments -Wno-switch: YES Compiler for C supports arguments -Wno-unused-result: YES Compiler for C supports arguments -Wno-unused-label: YES Compiler for C supports arguments -Wno-unused-variable: YES Compiler for Fortran supports arguments -Wno-argument-mismatch: YES Compiler for Fortran supports arguments -Wno-conversion: YES (cached) Compiler for Fortran supports arguments -Wno-intrinsic-shadow: YES Compiler for Fortran supports arguments -Wno-maybe-uninitialized: YES Compiler for Fortran supports arguments -Wno-surprising: YES Compiler for Fortran supports arguments -Wno-uninitialized: YES Compiler for Fortran supports arguments -Wno-unused-dummy-argument: YES Compiler for Fortran supports arguments -Wno-unused-label: YES Compiler for Fortran supports arguments -Wno-unused-variable: YES Compiler for Fortran supports arguments -Wno-tabs: YES Compiler for Fortran supports arguments -Wno-argument-mismatch: YES (cached) Compiler for Fortran supports arguments -Wno-conversion: YES (cached) Compiler for Fortran supports arguments -Wno-maybe-uninitialized: YES (cached) Compiler for Fortran supports arguments -Wno-unused-dummy-argument: YES (cached) Compiler for Fortran supports arguments -Wno-unused-label: YES (cached) Compiler for Fortran supports arguments -Wno-unused-variable: YES (cached) Compiler for Fortran supports arguments -Wno-tabs: YES (cached) Compiler for C supports link arguments -Wl,-no_compact_unwind: NO Compiler for C supports link arguments -Wl,-no_fixup_chains: NO Found CMake: /usr/bin/cmake (3.22.0) WARNING: CMake Toolchain: Failed to determine CMake compilers state Run-time dependency openblas found: NO (tried pkgconfig and cmake) Run-time dependency openblas found: NO (tried pkgconfig and cmake) ../skmisc/meson.build:173:9: ERROR: Dependency "OpenBLAS" not found, tried pkgconfig and cmake A full log can be found at /home/biocbuild/tmp/pip-install-27ldida5/scikit-misc_4996df2e2f72406c9519be2c3a252051/.mesonpy-187o8n43/meson-logs/meson-log.txt [end of output] note: This error originates from a subprocess, and is likely not a problem with pip. error: metadata-generation-failed × Encountered error while generating package metadata. ╰─> See above for output. note: This is an issue with the package mentioned above, not pip. hint: See above for details. Quitting from lines at lines 50-53 [getdat2] (compch12.Rmd) Error: processing vignette 'compch12.Rmd' failed with diagnostics: failed to install additional packages via pip --- failed re-building ‘compch12.Rmd’ --- re-building ‘scviR.Rmd’ using rmarkdown --- finished re-building ‘scviR.Rmd’ SUMMARY: processing the following files failed: ‘citeseq_tut.Rmd’ ‘compch12.Rmd’ Error: Vignette re-building failed. Execution halted