############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:oneSENSE.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings oneSENSE_1.26.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/oneSENSE.Rcheck’ * using R version 4.4.0 (2024-04-24) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.6 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘oneSENSE/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘oneSENSE’ version ‘1.26.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘oneSENSE’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... NOTE File LICENSE is not mentioned in the DESCRIPTION file. * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... ERROR Running examples in ‘oneSENSE-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: OneSmapperFlour > ### Title: Median heatplot generation > ### Aliases: OneSmapperFlour > > ### ** Examples > > webshot::install_phantomjs() Error in `process_initialize(self, private, command, args, stdin, stdout, …`: ! Native call to `processx_exec` failed Caused by error in `chain_call(c_processx_exec, command, c(command, args), pty, pty_options, …`: ! cannot start processx process '/Users/biocbuild/Library/Application Support/PhantomJS/phantomjs' (system error 86, Bad CPU type in executable) @unix/processx.c:613 (processx_exec) --- Backtrace: 1. webshot::install_phantomjs() 2. webshot:::is_phantomjs_version_latest(version) 3. webshot:::phantomjs_version() 4. webshot:::phantomjs_cmd_result("--version", quiet = TRUE) 5. utils::capture.output(invisible(phantom_run(args = args, wait = wait, … 6. base::withVisible(...elt(i)) 7. webshot:::phantom_run(args = args, wait = wait, quiet = quiet) 8. callr::process$new(phantom_bin, args = args, stdout = "|", stderr = "|", … 9. local initialize(...) 10. processx:::process_initialize(self, private, command, args, stdin, stdout, … 11. processx:::chain_call(c_processx_exec, command, c(command, args), pty, pty_options, … 12. | base::withCallingHandlers(do.call(".Call", list(.NAME, ...)), error = function(e… 13. | base::do.call(".Call", list(.NAME, ...)) 14. | base::.handleSimpleError(function (e) … 15. | local h(simpleError(msg, call)) 16. | processx:::throw_error(err, parent = e) Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 ERROR, 1 NOTE See ‘/Users/biocbuild/bbs-3.19-bioc/meat/oneSENSE.Rcheck/00check.log’ for details.