############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r SurfR -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data SurfR ### ############################################################################## ############################################################################## * checking for file 'SurfR/DESCRIPTION' ... OK * preparing 'SurfR': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'Intro_to_SurfR.Rmd' using rmarkdown trying URL '/system/files/public/file/gdc-client_v1.6.1_Windows_x64.zip' Quitting from lines 382-393 [unnamed-chunk-3] (Intro_to_SurfR.Rmd) Error: processing vignette 'Intro_to_SurfR.Rmd' failed with diagnostics: I couldn't find all the files from the query. Please check if the directory parameter is right or `GDCdownload` downloaded the samples. --- failed re-building 'Intro_to_SurfR.Rmd' SUMMARY: processing the following file failed: 'Intro_to_SurfR.Rmd' Error: Vignette re-building failed. Execution halted