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###
### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MACSr
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* checking for file ‘MACSr/DESCRIPTION’ ... OK
* preparing ‘MACSr’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MACSr.Rmd’ using rmarkdown

A module that was compiled using NumPy 1.x cannot be run in
NumPy 2.0.0 as it may crash. To support both 1.x and 2.x
versions of NumPy, modules must be compiled with NumPy 2.0.
Some module may need to rebuild instead e.g. with 'pybind11>=2.12'.

If you are a user of the module, the easiest solution will be to
downgrade to 'numpy<2' or try to upgrade the affected module.
We expect that some modules will need time to support NumPy 2.

Traceback (most recent call last):  File "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/reticulate/python/rpytools/loader.py", line 122, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/reticulate/python/rpytools/loader.py", line 96, in _run_hook
    module = hook()
  File "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/reticulate/python/rpytools/loader.py", line 120, in _hook
    return _find_and_load(name, import_)
  File "/private/var/cache/basilisk/1.16.0/MACSr/1.12.0/env_macs/lib/python3.10/site-packages/MACS3/Commands/callpeak_cmd.py", line 23, in <module>
    from MACS3.Utilities.OptValidator import opt_validate_callpeak
  File "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/reticulate/python/rpytools/loader.py", line 122, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/reticulate/python/rpytools/loader.py", line 96, in _run_hook
    module = hook()
  File "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/reticulate/python/rpytools/loader.py", line 120, in _hook
    return _find_and_load(name, import_)
  File "/private/var/cache/basilisk/1.16.0/MACSr/1.12.0/env_macs/lib/python3.10/site-packages/MACS3/Utilities/OptValidator.py", line 24, in <module>
    from MACS3.IO.Parser import BEDParser, ELANDResultParser, ELANDMultiParser, \
  File "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/reticulate/python/rpytools/loader.py", line 122, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/reticulate/python/rpytools/loader.py", line 96, in _run_hook
    module = hook()
  File "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/reticulate/python/rpytools/loader.py", line 120, in _hook
    return _find_and_load(name, import_)

Quitting from lines 88-94 [unnamed-chunk-3] (MACSr.Rmd)
Error: processing vignette 'MACSr.Rmd' failed with diagnostics:
ImportError: numpy.core.multiarray failed to import (auto-generated because you didn't call 'numpy.import_array()' after cimporting numpy; use '<void>numpy._import_array' to disable if you are certain you don't need it).
Run `reticulate::py_last_error()` for details.
--- failed re-building ‘MACSr.Rmd’

SUMMARY: processing the following file failed:
  ‘MACSr.Rmd’

Error: Vignette re-building failed.
Execution halted