############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL Harshlight ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘Harshlight’ ... ** using staged installation ** libs using C compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’ using SDK: ‘MacOSX11.3.sdk’ clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Harshlight.c -o Harshlight.o Harshlight.c:564:20: warning: variable 'p_num_points' set but not used [-Wunused-but-set-variable] int num_points, *p_num_points; //number of points inside the median kernel ^ Harshlight.c:789:7: warning: variable 'counter' set but not used [-Wunused-but-set-variable] int counter = 0; //counter ^ Harshlight.c:948:10: warning: variable 'cell_value' set but not used [-Wunused-but-set-variable] double cell_value; ^ Harshlight.c:1316:27: warning: unused variable 'sorted2' [-Wunused-variable] double *sorted; double *sorted2; ^ Harshlight.c:1471:26: warning: invalid conversion specifier ')' [-Wformat-invalid-specifier] PP "%d %d moveto (%.2f%) show\n", x_text_val, y_text - 215, *diff_br); ~^ Harshlight.c:1474:26: warning: invalid conversion specifier ')' [-Wformat-invalid-specifier] PP "%d %d moveto (%.2f%) show\n", x_text_val, y_text - 230, *diff_dr); ~^ Harshlight.c:93:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype] void chip_overall_header(); //general header for a chip ^ Harshlight.c:1504:6: note: conflicting prototype is here void chip_overall_header(int *chip_number, char **chip_name){ ^ Harshlight.c:1532:107: warning: invalid conversion specifier ')' [-Wformat-invalid-specifier] PP "%d %d moveto (Extended defects: the variance of the Error Image explained by the background is %.2f%) show\n", x_text, y_text - 30, *var); ~^ Harshlight.c:1542:26: warning: invalid conversion specifier ')' [-Wformat-invalid-specifier] PP "%d %d moveto (%.2f%) show\n", x_val_1, y_text - 100, *perc_c); ~^ Harshlight.c:1543:26: warning: invalid conversion specifier ')' [-Wformat-invalid-specifier] PP "%d %d moveto (%.2f%) show\n", x_val_2, y_text - 100, *perc_d); ~^ Harshlight.c:1555:107: warning: invalid conversion specifier ')' [-Wformat-invalid-specifier] PP "%d %d moveto (Extended defects: the variance of the Error Image explained by the background is %.2f%) show\n", x_text, y_text - 30, *var); ~^ 11 warnings generated. clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o Harshlight.so Harshlight.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/00LOCK-Harshlight/00new/Harshlight/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Harshlight)