############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r GenProSeq -R && E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe --arch x64 CMD build --keep-empty-dirs --no-resave-data GenProSeq ### ############################################################################## ############################################################################## * checking for file 'GenProSeq/DESCRIPTION' ... OK * preparing 'GenProSeq': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'GenProSeq.Rmd' using rmarkdown 2024-07-14 18:36:31.386859: I tensorflow/core/util/port.cc:113] oneDNN custom operations are on. You may see slightly different numerical results due to floating-point round-off errors from different computation orders. To turn them off, set the environment variable `TF_ENABLE_ONEDNN_OPTS=0`. 2024-07-14 18:36:41.771950: I tensorflow/core/util/port.cc:113] oneDNN custom operations are on. You may see slightly different numerical results due to floating-point round-off errors from different computation orders. To turn them off, set the environment variable `TF_ENABLE_ONEDNN_OPTS=0`. 2024-07-14 18:37:20.028103: I tensorflow/core/platform/cpu_feature_guard.cc:210] This TensorFlow binary is optimized to use available CPU instructions in performance-critical operations. To enable the following instructions: AVX2 AVX512F AVX512_VNNI FMA, in other operations, rebuild TensorFlow with the appropriate compiler flags. C:\PYTHON~1\Lib\site-packages\keras\src\layers\reshaping\flatten.py:37: UserWarning: Do not pass an `input_shape`/`input_dim` argument to a layer. When using Sequential models, prefer using an `Input(shape)` object as the first layer in the model instead. super().__init__(**kwargs) Quitting from lines 55-81 [unnamed-chunk-1] (GenProSeq.Rmd) Error: processing vignette 'GenProSeq.Rmd' failed with diagnostics: object 'combined' not found --- failed re-building 'GenProSeq.Rmd' SUMMARY: processing the following file failed: 'GenProSeq.Rmd' Error: Vignette re-building failed. Execution halted