############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD INSTALL CancerInSilico ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library’ * installing *source* package ‘CancerInSilico’ ... ** using staged installation ** libs using C++ compiler: ‘g++ (GCC) 10.3.1’ g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -c RunModel.cpp -o RunModel.o In file included from CellModels/../OffLatticeModel/OffLatticeCellBasedModel.h:8, from CellModels/DrasdoHohmeModel.h:7, from RunModel.cpp:4: CellModels/../OffLatticeModel/OffLatticeCell.h: In member function ‘PointPair OffLatticeCell::centers() const’: CellModels/../OffLatticeModel/OffLatticeCell.h:72:31: note: parameter passing for argument of type ‘std::pair, Point >’ when C++17 is enabled changed to match C++14 in GCC 10.1 72 | PointPair centers() const {return mCenters;} | ^ g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -c CellModels/DrasdoHohmeModel.cpp -o CellModels/DrasdoHohmeModel.o In file included from CellModels/../OffLatticeModel/OffLatticeCellBasedModel.h:8, from CellModels/DrasdoHohmeModel.h:7, from CellModels/DrasdoHohmeModel.cpp:1: CellModels/../OffLatticeModel/OffLatticeCell.h: In member function ‘PointPair OffLatticeCell::centers() const’: CellModels/../OffLatticeModel/OffLatticeCell.h:72:31: note: parameter passing for argument of type ‘std::pair, Point >’ when C++17 is enabled changed to match C++14 in GCC 10.1 72 | PointPair centers() const {return mCenters;} | ^ g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -c OffLatticeModel/OffLatticeCell.cpp -o OffLatticeModel/OffLatticeCell.o In file included from OffLatticeModel/OffLatticeCell.cpp:4: OffLatticeModel/OffLatticeCell.h: In member function ‘PointPair OffLatticeCell::centers() const’: OffLatticeModel/OffLatticeCell.h:72:31: note: parameter passing for argument of type ‘std::pair, Point >’ when C++17 is enabled changed to match C++14 in GCC 10.1 72 | PointPair centers() const {return mCenters;} | ^ g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -c OffLatticeModel/OffLatticeCellBasedModel.cpp -o OffLatticeModel/OffLatticeCellBasedModel.o In file included from OffLatticeModel/OffLatticeCellBasedModel.h:8, from OffLatticeModel/OffLatticeCellBasedModel.cpp:1: OffLatticeModel/OffLatticeCell.h: In member function ‘PointPair OffLatticeCell::centers() const’: OffLatticeModel/OffLatticeCell.h:72:31: note: parameter passing for argument of type ‘std::pair, Point >’ when C++17 is enabled changed to match C++14 in GCC 10.1 72 | PointPair centers() const {return mCenters;} | ^ g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -c OffLatticeModel/OffLatticeRadiusSolver.cpp -o OffLatticeModel/OffLatticeRadiusSolver.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -c Core/Cell.cpp -o Core/Cell.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -c Core/CellBasedModel.cpp -o Core/CellBasedModel.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -c Core/CellType.cpp -o Core/CellType.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -c Core/Drug.cpp -o Core/Drug.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -c Core/Random.cpp -o Core/Random.o In file included from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/mpl/aux_/na_assert.hpp:23, from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/mpl/arg.hpp:25, from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/mpl/placeholders.hpp:24, from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/iterator/iterator_categories.hpp:16, from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/iterator/iterator_concepts.hpp:10, from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/range/concepts.hpp:20, from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/range/size_type.hpp:20, from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/range/size.hpp:21, from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/random/hyperexponential_distribution.hpp:29, from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/random.hpp:70, from Core/Random.cpp:3: /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses] 194 | failed ************ (Pred::************ | ^ /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 199 | failed ************ (boost::mpl::not_::************ | ^ g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -c test-runner.cpp -o test-runner.o In file included from test-runner.cpp:2: Tests/catch.h:6473:41: error: array bound is not an integer constant before ‘]’ token 6473 | static char altStackMem[SIGSTKSZ]; | ^ Tests/catch.h: In constructor ‘Catch::FatalConditionHandler::FatalConditionHandler()’: Tests/catch.h:6492:30: error: ‘altStackMem’ was not declared in this scope 6492 | sigStack.ss_sp = altStackMem; | ^~~~~~~~~~~ Tests/catch.h: At global scope: Tests/catch.h:6524:53: error: array bound is not an integer constant before ‘]’ token 6524 | char FatalConditionHandler::altStackMem[SIGSTKSZ] = {}; | ^ make: *** [/home/biocbuild/R/R-beta-2024-04-15_r86425/etc/Makeconf:204: test-runner.o] Error 1 ERROR: compilation failed for package ‘CancerInSilico’ * removing ‘/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/CancerInSilico’