############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r BiocOncoTK -R && E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data BiocOncoTK ### ############################################################################## ############################################################################## * checking for file 'BiocOncoTK/DESCRIPTION' ... OK * preparing 'BiocOncoTK': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'BiocOncoTK.Rmd' using rmarkdown Quitting from lines 79-87 [lkgbm] (BiocOncoTK.Rmd) Error: processing vignette 'BiocOncoTK.Rmd' failed with diagnostics: failed to load resource name: AH97944 title: oncotree reason: error in evaluating the argument 'x' in selecting a method for function 'get': bad restore file magic number (file may be corrupted) -- no data loaded --- failed re-building 'BiocOncoTK.Rmd' --- re-building 'curatedMSIData.Rmd' using rmarkdown --- finished re-building 'curatedMSIData.Rmd' --- re-building 'maptcga.Rmd' using rmarkdown Quitting from lines 30-41 [lkt] (maptcga.Rmd) Error: processing vignette 'maptcga.Rmd' failed with diagnostics: failed to load resource name: AH97944 title: oncotree reason: error in evaluating the argument 'x' in selecting a method for function 'get': bad restore file magic number (file may be corrupted) -- no data loaded --- failed re-building 'maptcga.Rmd' SUMMARY: processing the following files failed: 'BiocOncoTK.Rmd' 'maptcga.Rmd' Error: Vignette re-building failed. Execution halted