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### Running command:
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###   F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:AlpsNMR.install-out.txt --library=F:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings AlpsNMR_4.6.0.tar.gz
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* using log directory 'F:/biocbuild/bbs-3.19-bioc/meat/AlpsNMR.Rcheck'
* using R version 4.4.0 (2024-04-24 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'AlpsNMR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'AlpsNMR' version '4.6.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'AlpsNMR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                               user system elapsed
SummarizedExperiment_to_nmr_data_1r            7.44   0.36   11.84
nmr_pca_outliers_robust                        5.73   0.21    9.83
plsda_auroc_vip_compare                        3.06   0.01   16.14
Peak_detection                                 2.71   0.27   27.44
nmr_meta_add                                   2.28   0.04   10.24
permutation_test_model                         2.14   0.02   14.35
permutation_test_plot                          2.13   0.03   14.69
nmr_pca_build_model                            2.00   0.11    9.91
bp_VIP_analysis                                2.05   0.05   13.03
nmr_interpolate_1D                             1.86   0.07    9.92
validate_nmr_dataset                           1.72   0.07    9.22
nmr_read_samples                               1.75   0.02    9.50
models_stability_plot_plsda                    1.53   0.00    8.44
nmr_data_analysis                              1.46   0.03    8.39
plot_plsda_multimodel                          1.46   0.03    8.03
nmr_data_1r_to_SummarizedExperiment            1.39   0.08    5.05
plot_plsda_samples                             1.44   0.02    8.03
SummarizedExperiment_to_nmr_dataset_peak_table 1.36   0.06    5.47
AlpsNMR-package                                1.25   0.11    5.16
bp_kfold_VIP_analysis                          1.35   0.01    8.46
nmr_dataset_peak_table_to_SummarizedExperiment 1.25   0.01    5.05
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK