############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 scDblFinder ### ############################################################################## ############################################################################## * checking for file ‘scDblFinder/DESCRIPTION’ ... OK * preparing ‘scDblFinder’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘computeDoubletDensity.Rmd’ using rmarkdown Quitting from lines 27-32 [unnamed-chunk-2] (computeDoubletDensity.Rmd) Error: processing vignette 'computeDoubletDensity.Rmd' failed with diagnostics: failed to load resource name: AH73905 title: Ensembl 97 EnsDb for Mus musculus reason: Required tables gene, tx, tx2exon, exon, chromosome are not present in the database! --- failed re-building ‘computeDoubletDensity.Rmd’ --- re-building ‘findDoubletClusters.Rmd’ using rmarkdown Warning: call dbDisconnect() when finished working with a connection Quitting from lines 27-32 [unnamed-chunk-2] (findDoubletClusters.Rmd) Error: processing vignette 'findDoubletClusters.Rmd' failed with diagnostics: failed to load resource name: AH73905 title: Ensembl 97 EnsDb for Mus musculus reason: Required tables gene, tx, tx2exon, exon, chromosome are not present in the database! --- failed re-building ‘findDoubletClusters.Rmd’ --- re-building ‘introduction.Rmd’ using rmarkdown --- finished re-building ‘introduction.Rmd’ --- re-building ‘recoverDoublets.Rmd’ using rmarkdown --- finished re-building ‘recoverDoublets.Rmd’ --- re-building ‘scATAC.Rmd’ using rmarkdown --- finished re-building ‘scATAC.Rmd’ --- re-building ‘scDblFinder.Rmd’ using rmarkdown --- finished re-building ‘scDblFinder.Rmd’ SUMMARY: processing the following files failed: ‘computeDoubletDensity.Rmd’ ‘findDoubletClusters.Rmd’ Error: Vignette re-building failed. Execution halted